test2
5 years ago
13 changed files with 1465 additions and 1 deletions
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#FROM nlknguyen/alpine-mpich:onbuild |
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FROM localhost:5000/mpi |
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# # ------------------------------------------------------------ |
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# # Build MPI project |
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# # ------------------------------------------------------------ |
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# Put all build steps and additional package installation here |
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# Note: the current directory is ${WORKDIR:=/project}, which is |
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# also the default directory where ${USER:=mpi} will SSH login to |
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# Copy the content of `project` directory in the host machine to |
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# the current working directory in this Docker image |
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#COPY project/ . |
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WORKDIR /project |
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# Normal build command |
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#RUN mpicc -o mpi_hello_world mpi_hello_world.c |
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# #################### |
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# For Docker beginner: |
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# After Docker syntax `RUN`, you can execute any command available in |
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# the current shell of the image. |
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# To switch to root: USER root |
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# To switch back to default user: USER ${USER} |
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@ -0,0 +1,67 @@ |
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# INSTALL |
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## Clone repo |
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See http://docs.vlabs.uniwa.gr/Howtos/git/use-git.adoc.html |
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## create a directory structure as shown below |
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``` |
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/ |
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├── etc |
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│ ├── bash_completion.d |
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│ │ └── swarmlab-mpi-autocompletion.sh |
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│ └── profile.d |
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│ └── swarmlab-mpi.sh |
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└── usr |
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└── share |
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└── swarmlab.io |
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└── mpi |
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├── commands |
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├── LICENSE |
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├── project |
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│ └── mpi_hello_world.c |
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├── ssh |
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│ ├── id_rsa |
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│ └── id_rsa.pub |
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└── swarmlab-mpi |
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``` |
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chmod +x all files in /usr/share/swarmlab.io |
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## Add the following lines to the end of .bashrc file |
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``` |
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if [ -d /etc/profile.d ]; then |
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for i in /etc/profile.d/*.sh; do |
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if [ -r $i ]; then |
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. $i |
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fi |
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done |
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unset i |
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fi |
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# enable programmable completion features (you don't need to enable |
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# this, if it's already enabled in /etc/bash.bashrc and /etc/profile |
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# sources /etc/bash.bashrc). |
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if ! shopt -oq posix; then |
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if [ -f /usr/share/bash-completion/bash_completion ]; then |
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. /usr/share/bash-completion/bash_completion |
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elif [ -f /etc/bash_completion ]; then |
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. /etc/bash_completion |
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fi |
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fi |
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``` |
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# Install Docker and Compose |
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See http://docs.vlabs.uniwa.gr/Howtos/docker/install.adoc.html |
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Ready :-) |
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@ -1,2 +1,26 @@ |
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# swarmlab-mpi |
MPICH SwarmLab.io |
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==================== |
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Currently, this directory provides a way to orchestrate a Swarmlab MPI cluster: |
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+ Using Docker Compose to replicate production environment on single Docker host |
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# Single-host with Docker Compose |
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Require **Docker Compose**; |
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Relevant files: |
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``` |
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Project |
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├── Dockerfile # Image specification |
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├── project # Sample program source code |
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│ └── mpi_hello_world.c |
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├── ssh # keys for accessing |
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│ ├── id_rsa # (could generate your own) |
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│ └── id_rsa.pub |
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├── .env # General configuration |
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├── docker-compose.yml # Container orchestration |
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└── cluster.sh # Commands wrapper ultility |
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``` |
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@ -0,0 +1,31 @@ |
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version: "2" |
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services: |
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registry: |
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image: registry |
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ports: |
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- "${REGISTRY_PORT}:5000" |
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master: |
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image: $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME |
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user: root |
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entrypoint: ["mpi_bootstrap", "role=master", "mpi_master_service_name=master", "mpi_worker_service_name=worker"] |
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ports: |
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- "${SSH_PORT}:22" |
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networks: |
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- net |
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volumes: |
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- ${PWD}:/project |
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worker: |
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image: $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME |
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user: root |
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entrypoint: ["mpi_bootstrap", "role=worker", "mpi_master_service_name=master", "mpi_worker_service_name=worker"] |
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networks: |
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- net |
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volumes: |
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- ${PWD}:/project |
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networks: |
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net: |
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#/usr/bin/env bash |
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_mpi() |
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{ |
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local commands_number=${DOTHIS_COMPLETION_COMMANDS_NUMBER:-50} |
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local IFS=$'\n' |
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local suggestions=($(compgen -W "$(cat $1 | sed 's/\t//')" -- "${COMP_WORDS[1]}")) |
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local sug=1 |
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if [ "${#suggestions[@]}" == "$sug" ]; then |
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local number="${suggestions[0]/%\ */}" |
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COMPREPLY=("$number") |
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else |
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for i in "${!suggestions[@]}"; do |
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suggestions[$i]="$(printf '%*s' "-$COLUMNS" "${suggestions[$i]}")" |
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done |
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COMPREPLY=("${suggestions[@]}") |
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fi |
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} |
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_mpi_completions() |
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{ |
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local LAB_files=${LAB_PATH} |
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if [ "${#COMP_WORDS[@]}" == "2" ] && [ "${#COMP_WORDS[@]}" != "3" ]; then |
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local file2="/usr/share/swarmlab.io/mpi/commands" |
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_mpi "$file2" 1 |
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fi |
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} |
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complete -F _mpi_completions swarmlab-mpi |
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@ -0,0 +1 @@ |
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export PATH=$PATH:/usr/share/swarmlab.io/mpi |
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@ -0,0 +1,4 @@ |
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REGISTRY_ADDR=localhost |
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REGISTRY_PORT=5000 |
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IMAGE_NAME=mpi |
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SSH_PORT=2222 |
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@ -0,0 +1,614 @@ |
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GNU AFFERO GENERAL PUBLIC LICENSE |
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Version 3, 19 November 2007 |
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Copyright (C) 2007 Free Software Foundation, Inc. <http s ://fsf.org/> |
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Everyone is permitted to copy and distribute verbatim copies of this license |
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document, but changing it is not allowed. |
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|
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Preamble |
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|
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The GNU Affero General Public License is a free, copyleft license for software |
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and other kinds of works, specifically designed to ensure cooperation with |
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the community in the case of network server software. |
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|
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|
The licenses for most software and other practical works are designed to take |
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away your freedom to share and change the works. By contrast, our General |
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|
Public Licenses are intended to guarantee your freedom to share and change |
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all versions of a program--to make sure it remains free software for all its |
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users. |
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When we speak of free software, we are referring to freedom, not price. Our |
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General Public Licenses are designed to make sure that you have the freedom |
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to distribute copies of free software (and charge for them if you wish), that |
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you receive source code or can get it if you want it, that you can change |
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the software or use pieces of it in new free programs, and that you know you |
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can do these things. |
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Developers that use our General Public Licenses protect your rights with two |
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steps: (1) assert copyright on the software, and (2) offer you this License |
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which gives you legal permission to copy, distribute and/or modify the software. |
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A secondary benefit of defending all users' freedom is that improvements made |
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in alternate versions of the program, if they receive widespread use, become |
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available for other developers to incorporate. Many developers of free software |
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are heartened and encouraged by the resulting cooperation. However, in the |
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case of software used on network servers, this result may fail to come about. |
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The GNU General Public License permits making a modified version and letting |
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the public access it on a server without ever releasing its source code to |
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the public. |
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The GNU Affero General Public License is designed specifically to ensure that, |
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in such cases, the modified source code becomes available to the community. |
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It requires the operator of a network server to provide the source code of |
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the modified version running there to the users of that server. Therefore, |
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public use of a modified version, on a publicly accessible server, gives the |
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public access to the source code of the modified version. |
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An older license, called the Affero General Public License and published by |
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Affero, was designed to accomplish similar goals. This is a different license, |
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not a version of the Affero GPL, but Affero has released a new version of |
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the Affero GPL which permits relicensing under this license. |
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The precise terms and conditions for copying, distribution and modification |
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follow. |
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|
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TERMS AND CONDITIONS |
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0. Definitions. |
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"This License" refers to version 3 of the GNU Affero General Public License. |
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"Copyright" also means copyright-like laws that apply to other kinds of works, |
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such as semiconductor masks. |
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"The Program" refers to any copyrightable work licensed under this License. |
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Each licensee is addressed as "you". "Licensees" and "recipients" may be individuals |
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or organizations. |
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To "modify" a work means to copy from or adapt all or part of the work in |
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copy. The resulting work is called a "modified version" of the earlier work |
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or a work "based on" the earlier work. |
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A "covered work" means either the unmodified Program or a work based on the |
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Program. |
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To "propagate" a work means to do anything with it that, without permission, |
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would make you directly or secondarily liable for infringement under applicable |
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copyright law, except executing it on a computer or modifying a private copy. |
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Propagation includes copying, distribution (with or without modification), |
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making available to the public, and in some countries other activities as |
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well. |
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To "convey" a work means any kind of propagation that enables other parties |
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An interactive user interface displays "Appropriate Legal Notices" to the |
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extent that it includes a convenient and prominently visible feature that |
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(1) displays an appropriate copyright notice, and (2) tells the user that |
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there is no warranty for the work (except to the extent that warranties are |
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provided), that licensees may convey the work under this License, and how |
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1. Source Code. |
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The "source code" for a work means the preferred form of the work for making |
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A "Standard Interface" means an interface that either is an official standard |
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defined by a recognized standards body, or, in the case of interfaces specified |
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for a particular programming language, one that is widely used among developers |
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The "System Libraries" of an executable work include anything, other than |
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the work as a whole, that (a) is included in the normal form of packaging |
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serves only to enable use of the work with that Major Component, or to implement |
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a Standard Interface for which an implementation is available to the public |
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in source code form. A "Major Component", in this context, means a major essential |
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The "Corresponding Source" for a work in object code form means all the source |
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However, it does not include the work's System Libraries, or general-purpose |
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those activities but which are not part of the work. For example, Corresponding |
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Source includes interface definition files associated with source files for |
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subprograms that the work is specifically designed to require, such as by |
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subprograms and other parts of the work. |
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The Corresponding Source need not include anything that users can regenerate |
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automatically from other parts of the Corresponding Source. |
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The Corresponding Source for a work in source code form is that same work. |
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2. Basic Permissions. |
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All rights granted under this License are granted for the term of copyright |
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on the Program, and are irrevocable provided the stated conditions are met. |
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This License explicitly affirms your unlimited permission to run the unmodified |
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only if the output, given its content, constitutes a covered work. This License |
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acknowledges your rights of fair use or other equivalent, as provided by copyright |
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law. |
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You may make, run and propagate covered works that you do not convey, without |
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and control, on terms that prohibit them from making any copies of your copyrighted |
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Conveying under any other circumstances is permitted solely under the conditions |
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stated below. Sublicensing is not allowed; section 10 makes it unnecessary. |
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3. Protecting Users' Legal Rights From Anti-Circumvention Law. |
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When you convey a covered work, you waive any legal power to forbid circumvention |
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you disclaim any intention to limit operation or modification of the work |
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You may convey verbatim copies of the Program's source code as you receive |
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it, in any medium, provided that you conspicuously and appropriately publish |
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on each copy an appropriate copyright notice; keep intact all notices stating |
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that this License and any non-permissive terms added in accord with section |
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7 apply to the code; keep intact all notices of the absence of any warranty; |
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and give all recipients a copy of this License along with the Program. |
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You may charge any price or no price for each copy that you convey, and you |
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may offer support or warranty protection for a fee. |
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You may convey a work based on the Program, or the modifications to produce |
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a) The work must carry prominent notices stating that you modified it, and |
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giving a relevant date. |
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b) The work must carry prominent notices stating that it is released under |
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this License and any conditions added under section 7. This requirement modifies |
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the requirement in section 4 to "keep intact all notices". |
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c) You must license the entire work, as a whole, under this License to anyone |
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who comes into possession of a copy. This License will therefore apply, along |
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with any applicable section 7 additional terms, to the whole of the work, |
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and all its parts, regardless of how they are packaged. This License gives |
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no permission to license the work in any other way, but it does not invalidate |
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d) If the work has interactive user interfaces, each must display Appropriate |
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Legal Notices; however, if the Program has interactive interfaces that do |
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not display Appropriate Legal Notices, your work need not make them do so. |
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which are not by their nature extensions of the covered work, and which are |
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a storage or distribution medium, is called an "aggregate" if the compilation |
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and its resulting copyright are not used to limit the access or legal rights |
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of the compilation's users beyond what the individual works permit. Inclusion |
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of a covered work in an aggregate does not cause this License to apply to |
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the other parts of the aggregate. |
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6. Conveying Non-Source Forms. |
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You may convey a covered work in object code form under the terms of sections |
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4 and 5, provided that you also convey the machine-readable Corresponding |
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Source under the terms of this License, in one of these ways: |
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a) Convey the object code in, or embodied in, a physical product (including |
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a physical distribution medium), accompanied by the Corresponding Source fixed |
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on a durable physical medium customarily used for software interchange. |
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|
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b) Convey the object code in, or embodied in, a physical product (including |
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a physical distribution medium), accompanied by a written offer, valid for |
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at least three years and valid for as long as you offer spare parts or customer |
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support for that product model, to give anyone who possesses the object code |
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either (1) a copy of the Corresponding Source for all the software in the |
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product that is covered by this License, on a durable physical medium customarily |
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used for software interchange, for a price no more than your reasonable cost |
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of physically performing this conveying of source, or (2) access to copy the |
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Corresponding Source from a network server at no charge. |
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c) Convey individual copies of the object code with a copy of the written |
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occasionally and noncommercially, and only if you received the object code |
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with such an offer, in accord with subsection 6b. |
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|
|
||||
|
d) Convey the object code by offering access from a designated place (gratis |
||||
|
or for a charge), and offer equivalent access to the Corresponding Source |
||||
|
in the same way through the same place at no further charge. You need not |
||||
|
require recipients to copy the Corresponding Source along with the object |
||||
|
code. If the place to copy the object code is a network server, the Corresponding |
||||
|
Source may be on a different server (operated by you or a third party) that |
||||
|
supports equivalent copying facilities, provided you maintain clear directions |
||||
|
next to the object code saying where to find the Corresponding Source. Regardless |
||||
|
of what server hosts the Corresponding Source, you remain obligated to ensure |
||||
|
that it is available for as long as needed to satisfy these requirements. |
||||
|
|
||||
|
e) Convey the object code using peer-to-peer transmission, provided you inform |
||||
|
other peers where the object code and Corresponding Source of the work are |
||||
|
being offered to the general public at no charge under subsection 6d. |
||||
|
|
||||
|
A separable portion of the object code, whose source code is excluded from |
||||
|
the Corresponding Source as a System Library, need not be included in conveying |
||||
|
the object code work. |
||||
|
|
||||
|
A "User Product" is either (1) a "consumer product", which means any tangible |
||||
|
personal property which is normally used for personal, family, or household |
||||
|
purposes, or (2) anything designed or sold for incorporation into a dwelling. |
||||
|
In determining whether a product is a consumer product, doubtful cases shall |
||||
|
be resolved in favor of coverage. For a particular product received by a particular |
||||
|
user, "normally used" refers to a typical or common use of that class of product, |
||||
|
regardless of the status of the particular user or of the way in which the |
||||
|
particular user actually uses, or expects or is expected to use, the product. |
||||
|
A product is a consumer product regardless of whether the product has substantial |
||||
|
commercial, industrial or non-consumer uses, unless such uses represent the |
||||
|
only significant mode of use of the product. |
||||
|
|
||||
|
"Installation Information" for a User Product means any methods, procedures, |
||||
|
authorization keys, or other information required to install and execute modified |
||||
|
versions of a covered work in that User Product from a modified version of |
||||
|
its Corresponding Source. The information must suffice to ensure that the |
||||
|
continued functioning of the modified object code is in no case prevented |
||||
|
or interfered with solely because modification has been made. |
||||
|
|
||||
|
If you convey an object code work under this section in, or with, or specifically |
||||
|
for use in, a User Product, and the conveying occurs as part of a transaction |
||||
|
in which the right of possession and use of the User Product is transferred |
||||
|
to the recipient in perpetuity or for a fixed term (regardless of how the |
||||
|
transaction is characterized), the Corresponding Source conveyed under this |
||||
|
section must be accompanied by the Installation Information. But this requirement |
||||
|
does not apply if neither you nor any third party retains the ability to install |
||||
|
modified object code on the User Product (for example, the work has been installed |
||||
|
in ROM). |
||||
|
|
||||
|
The requirement to provide Installation Information does not include a requirement |
||||
|
to continue to provide support service, warranty, or updates for a work that |
||||
|
has been modified or installed by the recipient, or for the User Product in |
||||
|
which it has been modified or installed. Access to a network may be denied |
||||
|
when the modification itself materially and adversely affects the operation |
||||
|
of the network or violates the rules and protocols for communication across |
||||
|
the network. |
||||
|
|
||||
|
Corresponding Source conveyed, and Installation Information provided, in accord |
||||
|
with this section must be in a format that is publicly documented (and with |
||||
|
an implementation available to the public in source code form), and must require |
||||
|
no special password or key for unpacking, reading or copying. |
||||
|
|
||||
|
7. Additional Terms. |
||||
|
|
||||
|
"Additional permissions" are terms that supplement the terms of this License |
||||
|
by making exceptions from one or more of its conditions. Additional permissions |
||||
|
that are applicable to the entire Program shall be treated as though they |
||||
|
were included in this License, to the extent that they are valid under applicable |
||||
|
law. If additional permissions apply only to part of the Program, that part |
||||
|
may be used separately under those permissions, but the entire Program remains |
||||
|
governed by this License without regard to the additional permissions. |
||||
|
|
||||
|
When you convey a copy of a covered work, you may at your option remove any |
||||
|
additional permissions from that copy, or from any part of it. (Additional |
||||
|
permissions may be written to require their own removal in certain cases when |
||||
|
you modify the work.) You may place additional permissions on material, added |
||||
|
by you to a covered work, for which you have or can give appropriate copyright |
||||
|
permission. |
||||
|
|
||||
|
Notwithstanding any other provision of this License, for material you add |
||||
|
to a covered work, you may (if authorized by the copyright holders of that |
||||
|
material) supplement the terms of this License with terms: |
||||
|
|
||||
|
a) Disclaiming warranty or limiting liability differently from the terms of |
||||
|
sections 15 and 16 of this License; or |
||||
|
|
||||
|
b) Requiring preservation of specified reasonable legal notices or author |
||||
|
attributions in that material or in the Appropriate Legal Notices displayed |
||||
|
by works containing it; or |
||||
|
|
||||
|
c) Prohibiting misrepresentation of the origin of that material, or requiring |
||||
|
that modified versions of such material be marked in reasonable ways as different |
||||
|
from the original version; or |
||||
|
|
||||
|
d) Limiting the use for publicity purposes of names of licensors or authors |
||||
|
of the material; or |
||||
|
|
||||
|
e) Declining to grant rights under trademark law for use of some trade names, |
||||
|
trademarks, or service marks; or |
||||
|
|
||||
|
f) Requiring indemnification of licensors and authors of that material by |
||||
|
anyone who conveys the material (or modified versions of it) with contractual |
||||
|
assumptions of liability to the recipient, for any liability that these contractual |
||||
|
assumptions directly impose on those licensors and authors. |
||||
|
|
||||
|
All other non-permissive additional terms are considered "further restrictions" |
||||
|
within the meaning of section 10. If the Program as you received it, or any |
||||
|
part of it, contains a notice stating that it is governed by this License |
||||
|
along with a term that is a further restriction, you may remove that term. |
||||
|
If a license document contains a further restriction but permits relicensing |
||||
|
or conveying under this License, you may add to a covered work material governed |
||||
|
by the terms of that license document, provided that the further restriction |
||||
|
does not survive such relicensing or conveying. |
||||
|
|
||||
|
If you add terms to a covered work in accord with this section, you must place, |
||||
|
in the relevant source files, a statement of the additional terms that apply |
||||
|
to those files, or a notice indicating where to find the applicable terms. |
||||
|
|
||||
|
Additional terms, permissive or non-permissive, may be stated in the form |
||||
|
of a separately written license, or stated as exceptions; the above requirements |
||||
|
apply either way. |
||||
|
|
||||
|
8. Termination. |
||||
|
|
||||
|
You may not propagate or modify a covered work except as expressly provided |
||||
|
under this License. Any attempt otherwise to propagate or modify it is void, |
||||
|
and will automatically terminate your rights under this License (including |
||||
|
any patent licenses granted under the third paragraph of section 11). |
||||
|
|
||||
|
However, if you cease all violation of this License, then your license from |
||||
|
a particular copyright holder is reinstated (a) provisionally, unless and |
||||
|
until the copyright holder explicitly and finally terminates your license, |
||||
|
and (b) permanently, if the copyright holder fails to notify you of the violation |
||||
|
by some reasonable means prior to 60 days after the cessation. |
||||
|
|
||||
|
Moreover, your license from a particular copyright holder is reinstated permanently |
||||
|
if the copyright holder notifies you of the violation by some reasonable means, |
||||
|
this is the first time you have received notice of violation of this License |
||||
|
(for any work) from that copyright holder, and you cure the violation prior |
||||
|
to 30 days after your receipt of the notice. |
||||
|
|
||||
|
Termination of your rights under this section does not terminate the licenses |
||||
|
of parties who have received copies or rights from you under this License. |
||||
|
If your rights have been terminated and not permanently reinstated, you do |
||||
|
not qualify to receive new licenses for the same material under section 10. |
||||
|
|
||||
|
9. Acceptance Not Required for Having Copies. |
||||
|
|
||||
|
You are not required to accept this License in order to receive or run a copy |
||||
|
of the Program. Ancillary propagation of a covered work occurring solely as |
||||
|
a consequence of using peer-to-peer transmission to receive a copy likewise |
||||
|
does not require acceptance. However, nothing other than this License grants |
||||
|
you permission to propagate or modify any covered work. These actions infringe |
||||
|
copyright if you do not accept this License. Therefore, by modifying or propagating |
||||
|
a covered work, you indicate your acceptance of this License to do so. |
||||
|
|
||||
|
10. Automatic Licensing of Downstream Recipients. |
||||
|
|
||||
|
Each time you convey a covered work, the recipient automatically receives |
||||
|
a license from the original licensors, to run, modify and propagate that work, |
||||
|
subject to this License. You are not responsible for enforcing compliance |
||||
|
by third parties with this License. |
||||
|
|
||||
|
An "entity transaction" is a transaction transferring control of an organization, |
||||
|
or substantially all assets of one, or subdividing an organization, or merging |
||||
|
organizations. If propagation of a covered work results from an entity transaction, |
||||
|
each party to that transaction who receives a copy of the work also receives |
||||
|
whatever licenses to the work the party's predecessor in interest had or could |
||||
|
give under the previous paragraph, plus a right to possession of the Corresponding |
||||
|
Source of the work from the predecessor in interest, if the predecessor has |
||||
|
it or can get it with reasonable efforts. |
||||
|
|
||||
|
You may not impose any further restrictions on the exercise of the rights |
||||
|
granted or affirmed under this License. For example, you may not impose a |
||||
|
license fee, royalty, or other charge for exercise of rights granted under |
||||
|
this License, and you may not initiate litigation (including a cross-claim |
||||
|
or counterclaim in a lawsuit) alleging that any patent claim is infringed |
||||
|
by making, using, selling, offering for sale, or importing the Program or |
||||
|
any portion of it. |
||||
|
|
||||
|
11. Patents. |
||||
|
|
||||
|
A "contributor" is a copyright holder who authorizes use under this License |
||||
|
of the Program or a work on which the Program is based. The work thus licensed |
||||
|
is called the contributor's "contributor version". |
||||
|
|
||||
|
A contributor's "essential patent claims" are all patent claims owned or controlled |
||||
|
by the contributor, whether already acquired or hereafter acquired, that would |
||||
|
be infringed by some manner, permitted by this License, of making, using, |
||||
|
or selling its contributor version, but do not include claims that would be |
||||
|
infringed only as a consequence of further modification of the contributor |
||||
|
version. For purposes of this definition, "control" includes the right to |
||||
|
grant patent sublicenses in a manner consistent with the requirements of this |
||||
|
License. |
||||
|
|
||||
|
Each contributor grants you a non-exclusive, worldwide, royalty-free patent |
||||
|
license under the contributor's essential patent claims, to make, use, sell, |
||||
|
offer for sale, import and otherwise run, modify and propagate the contents |
||||
|
of its contributor version. |
||||
|
|
||||
|
In the following three paragraphs, a "patent license" is any express agreement |
||||
|
or commitment, however denominated, not to enforce a patent (such as an express |
||||
|
permission to practice a patent or covenant not to s ue for patent infringement). |
||||
|
To "grant" such a patent license to a party means to make such an agreement |
||||
|
or commitment not to enforce a patent against the party. |
||||
|
|
||||
|
If you convey a covered work, knowingly relying on a patent license, and the |
||||
|
Corresponding Source of the work is not available for anyone to copy, free |
||||
|
of charge and under the terms of this License, through a publicly available |
||||
|
network server or other readily accessible means, then you must either (1) |
||||
|
cause the Corresponding Source to be so available, or (2) arrange to deprive |
||||
|
yourself of the benefit of the patent license for this particular work, or |
||||
|
(3) arrange, in a manner consistent with the requirements of this License, |
||||
|
to extend the patent |
||||
|
|
||||
|
license to downstream recipients. "Knowingly relying" means you have actual |
||||
|
knowledge that, but for the patent license, your conveying the covered work |
||||
|
in a country, or your recipient's use of the covered work in a country, would |
||||
|
infringe one or more identifiable patents in that country that you have reason |
||||
|
to believe are valid. |
||||
|
|
||||
|
If, pursuant to or in connection with a single transaction or arrangement, |
||||
|
you convey, or propagate by procuring conveyance of, a covered work, and grant |
||||
|
a patent license to some of the parties receiving the covered work authorizing |
||||
|
them to use, propagate, modify or convey a specific copy of the covered work, |
||||
|
then the patent license you grant is automatically extended to all recipients |
||||
|
of the covered work and works based on it. |
||||
|
|
||||
|
A patent license is "discriminatory" if it does not include within the scope |
||||
|
of its coverage, prohibits the exercise of, or is conditioned on the non-exercise |
||||
|
of one or more of the rights that are specifically granted under this License. |
||||
|
You may not convey a covered work if you are a party to an arrangement with |
||||
|
a third party that is in the business of distributing software, under which |
||||
|
you make payment to the third party based on the extent of your activity of |
||||
|
conveying the work, and under which the third party grants, to any of the |
||||
|
parties who would receive the covered work from you, a discriminatory patent |
||||
|
license (a) in connection with copies of the covered work conveyed by you |
||||
|
(or copies made from those copies), or (b) primarily for and in connection |
||||
|
with specific products or compilations that contain the covered work, unless |
||||
|
you entered into that arrangement, or that patent license was granted, prior |
||||
|
to 28 March 2007. |
||||
|
|
||||
|
Nothing in this License shall be construed as excluding or limiting any implied |
||||
|
license or other defenses to infringement that may otherwise be available |
||||
|
to you under applicable patent law. |
||||
|
|
||||
|
12. No Surrender of Others' Freedom. |
||||
|
|
||||
|
If conditions are imposed on you (whether by court order, agreement or otherwise) |
||||
|
that contradict the conditions of this License, they do not excuse you from |
||||
|
the conditions of this License. If you cannot convey a covered work so as |
||||
|
to satisfy simultaneously your obligations under this License and any other |
||||
|
pertinent obligations, then as a consequence you may |
||||
|
|
||||
|
not convey it at all. For example, if you agree to terms that obligate you |
||||
|
to collect a royalty for further conveying from those to whom you convey the |
||||
|
Program, the only way you could satisfy both those terms and this License |
||||
|
would be to refrain entirely from conveying the Program. |
||||
|
|
||||
|
13. Remote Network Interaction; Use with the GNU General Public License. |
||||
|
|
||||
|
Notwithstanding any other provision of this License, if you modify the Program, |
||||
|
your modified version must prominently offer all users interacting with it |
||||
|
remotely through a computer network (if your version supports such interaction) |
||||
|
an opportunity to receive the Corresponding Source of your version by providing |
||||
|
access to the Corresponding Source from a network server at no charge, through |
||||
|
some standard or customary means of facilitating copying of software. This |
||||
|
Corresponding Source shall include the Corresponding Source for any work covered |
||||
|
by version 3 of the GNU General Public License that is incorporated pursuant |
||||
|
to the following paragraph. |
||||
|
|
||||
|
Notwithstanding any other provision of this License, you have permission to |
||||
|
link or combine any covered work with a work licensed under version 3 of the |
||||
|
GNU General Public License into a single combined work, and to convey the |
||||
|
resulting work. The terms of this License will continue to apply to the part |
||||
|
which is the covered work, but the work with which it is combined will remain |
||||
|
governed by version 3 of the GNU General Public License. |
||||
|
|
||||
|
14. Revised Versions of this License. |
||||
|
|
||||
|
The Free Software Foundation may publish revised and/or new versions of the |
||||
|
GNU Affero General Public License from time to time. Such new versions will |
||||
|
be similar in spirit to the present version, but may differ in detail to address |
||||
|
new problems or concerns. |
||||
|
|
||||
|
Each version is given a distinguishing version number. If the Program specifies |
||||
|
that a certain numbered version of the GNU Affero General Public License "or |
||||
|
any later version" applies to it, you have the option of following the terms |
||||
|
and conditions either of that numbered version or of any later version published |
||||
|
by the Free Software Foundation. If the Program does not specify a version |
||||
|
number of the GNU Affero General Public License, you may choose any version |
||||
|
ever published by the Free Software Foundation. |
||||
|
|
||||
|
If the Program specifies that a proxy can decide which future versions of |
||||
|
the GNU Affero General Public License can be used, that proxy's public statement |
||||
|
of acceptance of a version permanently authorizes you to choose that version |
||||
|
for the Program. |
||||
|
|
||||
|
Later license versions may give you additional or different permissions. However, |
||||
|
no additional obligations are imposed on any author or copyright holder as |
||||
|
a result of your choosing to follow a later version. |
||||
|
|
||||
|
15. Disclaimer of Warranty. |
||||
|
|
||||
|
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE |
||||
|
LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR |
||||
|
OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER |
||||
|
EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES |
||||
|
OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS |
||||
|
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM |
||||
|
PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR |
||||
|
CORRECTION. |
||||
|
|
||||
|
16. Limitation of Liability. |
||||
|
|
||||
|
IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL |
||||
|
ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM |
||||
|
AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, |
||||
|
INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO |
||||
|
USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED |
||||
|
INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE |
||||
|
PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER |
||||
|
PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. |
||||
|
|
||||
|
17. Interpretation of Sections 15 and 16. |
||||
|
|
||||
|
If the disclaimer of warranty and limitation of liability provided above cannot |
||||
|
be given local legal effect according to their terms, reviewing courts shall |
||||
|
apply local law that most closely approximates an absolute waiver of all civil |
||||
|
liability in connection with the Program, unless a warranty or assumption |
||||
|
of liability accompanies a copy of the Program in return for a fee. END OF |
||||
|
TERMS AND CONDITIONS |
||||
|
|
||||
|
How to Apply These Terms to Your New Programs |
||||
|
|
||||
|
If you develop a new program, and you want it to be of the greatest possible |
||||
|
use to the public, the best way to achieve this is to make it free software |
||||
|
which everyone can redistribute and change under these terms. |
||||
|
|
||||
|
To do so, attach the following notices to the program. It is safest to attach |
||||
|
them to the start of each source file to most effectively state the exclusion |
||||
|
of warranty; and each file should have at least the "copyright" line and a |
||||
|
pointer to where the full notice is found. |
||||
|
|
||||
|
<one line to give the program's name and a brief idea of what it does.> |
||||
|
|
||||
|
Copyright (C) <year> <name of author> |
||||
|
|
||||
|
This program is free software: you can redistribute it and/or modify it under |
||||
|
the terms of the GNU Affero General Public License as published by the Free |
||||
|
Software Foundation, either version 3 of the License, or (at your option) |
||||
|
any later version. |
||||
|
|
||||
|
This program is distributed in the hope that it will be useful, but WITHOUT |
||||
|
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS |
||||
|
FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more |
||||
|
details. |
||||
|
|
||||
|
You should have received a copy of the GNU Affero General Public License along |
||||
|
with this program. If not, see <http s ://www.gnu.org/licenses/>. |
||||
|
|
||||
|
Also add information on how to contact you by electronic and paper mail. |
||||
|
|
||||
|
If your software can interact with users remotely through a computer network, |
||||
|
you should also make sure that it provides a way for users to get its source. |
||||
|
For example, if your program is a web application, its interface could display |
||||
|
a "Source" link that leads users to an archive of the code. There are many |
||||
|
ways you could offer source, and different solutions will be better for different |
||||
|
programs; see section 13 for the specific requirements. |
||||
|
|
||||
|
You should also get your employer (if you work as a programmer) or school, |
||||
|
if any, to sign a "copyright disclaimer" for the program, if necessary. For |
||||
|
more information on this, and how to apply and follow the GNU AGPL, see <http |
||||
|
s ://www.gnu.org/licenses/>. |
||||
@ -0,0 +1,12 @@ |
|||||
|
create create project (swarmlab-mpi create) |
||||
|
up start swarmlab-mpi (swarmlab-mpi up size=10) |
||||
|
scale resize swarmlab-mpi (swarmlab-mpi scale size=30) |
||||
|
reload rebuild image (swarmlab-mpi reload size=15) |
||||
|
login login swarmlab-mpi (swarmlab-mpi login) |
||||
|
exec execute command (swarmlab-mpi exec [SHELL COMMAND]) |
||||
|
down stop swarmlab-mpi (swarmlab-mpi down) |
||||
|
clean clean project (swarmlab-mpi clean) |
||||
|
list show instances (swarmlab-mpi swarmlab-mpi list) |
||||
|
help show help (swarmlab-mpi help) |
||||
|
|
||||
|
|
||||
@ -0,0 +1,38 @@ |
|||||
|
// Author: Wes Kendall
|
||||
|
// Copyright 2011 www.mpitutorial.com
|
||||
|
// This code is provided freely with the tutorials on mpitutorial.com. Feel
|
||||
|
// free to modify it for your own use. Any distribution of the code must
|
||||
|
// either provide a link to www.mpitutorial.com or keep this header intact.
|
||||
|
//
|
||||
|
// An intro MPI hello world program that uses MPI_Init, MPI_Comm_size,
|
||||
|
// MPI_Comm_rank, MPI_Finalize, and MPI_Get_processor_name.
|
||||
|
//
|
||||
|
#include <mpi.h> |
||||
|
#include <stdio.h> |
||||
|
|
||||
|
int main(int argc, char** argv) { |
||||
|
// Initialize the MPI environment. The two arguments to MPI Init are not
|
||||
|
// currently used by MPI implementations, but are there in case future
|
||||
|
// implementations might need the arguments.
|
||||
|
MPI_Init(NULL, NULL); |
||||
|
|
||||
|
// Get the number of processes
|
||||
|
int world_size; |
||||
|
MPI_Comm_size(MPI_COMM_WORLD, &world_size); |
||||
|
|
||||
|
// Get the rank of the process
|
||||
|
int world_rank; |
||||
|
MPI_Comm_rank(MPI_COMM_WORLD, &world_rank); |
||||
|
|
||||
|
// Get the name of the processor
|
||||
|
char processor_name[MPI_MAX_PROCESSOR_NAME]; |
||||
|
int name_len; |
||||
|
MPI_Get_processor_name(processor_name, &name_len); |
||||
|
|
||||
|
// Print off a hello world message
|
||||
|
printf("Hello world from processor %s, rank %d out of %d processors\n", |
||||
|
processor_name, world_rank, world_size); |
||||
|
|
||||
|
// Finalize the MPI environment. No more MPI calls can be made after this
|
||||
|
MPI_Finalize(); |
||||
|
} |
||||
@ -0,0 +1,27 @@ |
|||||
|
-----BEGIN RSA PRIVATE KEY----- |
||||
|
MIIEpQIBAAKCAQEAoKG1DtjMXHDJfF59Y5nO7Yl38fkjRL1LQhF7RZKbGScWBNIW |
||||
|
foAS0wrd3wUnd5YMtIeiBj98H+V8IEn0ChAAxGfHXqqmmYlU6ABESINob+h70Bnm |
||||
|
UwiRbRnA64o3d9+cz2T8YLf+1p7///Z8LA8U+7rS+kvKvtYCQ9llDAxtbe39CxCs |
||||
|
2HASam3U6VArq9SdSqph5MudBaYhaxx4V8VDdXEhG2pimlh8e7zdPZ8AYbYLLDhq |
||||
|
Ytd+wn9azLXPQ3w/vC+Pn4taUBYnlERDY45vaVsPdnR+ao9ckMLUS6EwJVQmgMzB |
||||
|
2yyNCbPQYvRPL0rxoGstfCmmjY3EzOh6kEA6wwIDAQABAoIBAHqrAxnTdj0h5LyV |
||||
|
bCwjyWKdGHwxRj24UUCjGQCIdOlAcBA+X+863yVLpyQpS3qHnCxBZ/pdgOza02/V |
||||
|
CgilL/DNT/N7Xr7hoXWKvpqhv5+2atcA8GN4p5YplKpLYxCoM5guBo3V9UbxJY7T |
||||
|
LQB4hA25HmUGfE5AIHqwCfqpgufvIO1enhe1Vh/6l1FJqJuNj2pBGeXOyOMV95GN |
||||
|
xC5/BVytJIx2Rts5qtwpt5iPE3pKdsrWc71qACxk3dG8h9OZnuE3vuCg/Wp8jdwk |
||||
|
NHZ6nWlt0BbST3wN0pyTp6cqtZ0qqfSpZCVRegeQW5ENR9NaigDX6RADKRnms46J |
||||
|
ziDSZAECgYEA0WBDY47CA9Ej0Y2zBcV3x03cznSnxr7BVty32xbnNgxGF5jNUDdU |
||||
|
E2JwJs86sV75VV0fpgrbN45lBV/2ImefrPr4kJAIL2J4eyVdOTTT/DO9Tuw6NP8R |
||||
|
AYMZOzOlgFjx3arnjlOK5AicFseWFCXvezuAMPcGpImgw7xHHM3RcFcCgYEAxGa2 |
||||
|
T+J119HWf15kN7bx5RaUl9J4DvvE5oHtA7zsMPO2fRpfwXAb8yKwIXfZ7186frPb |
||||
|
jo3ZQykcPuJ3MldvTWEuUhY5W1HSF1sBJOPZHuRfQicv8Uj4Y1kWltQf4Ikb3Uyh |
||||
|
T0fZJul4HkPAo/Q65zIAtJ9tWukAP/lmnwO9VXUCgYEAiY62F4WmH/3ai4WOFX+b |
||||
|
5xxXsmhgBiozOc8/F7jfZNoBfuVMFqSTHz0wM784b2nXY+cPsPY2+jQaWMKoIgh0 |
||||
|
lqA4iDmotwD56OYubjQwBeU0PdLjlwfw805fWE7hMAa/uQPcp9xpRtIFQs4T4t7d |
||||
|
jNgVq5XQDm/BaHedPOZX8HcCgYEAuKpu31vqO7wUt/vTtUMx3JpHqxz9P/FgqPAf |
||||
|
H/WiC0EMJEMJKAO2c/z4qO9dHiJnCL0qQraDQw/DfClJtC7b+2DVwd8dnQyowscR |
||||
|
o1MNUmueWcAo5vEag6c/gx/+vQuOBJ1JyxaeSmUZSTOhTUeVns64NRz2IJWWY5Cn |
||||
|
+fn1KwUCgYEAjYYeQX/W+2r8SFipPQQi/36EqLPwko58C/sbJR0gySP6El7hNQRt |
||||
|
Sdmd9hfMXRR+VCZWmmzb6T4fc80XxteI9eANkZ7xhNuQe11EDvPqmc9WSF0s+l1T |
||||
|
eQnkt+an7Qv2prDSU6d1KlOrOuCXU8IhbkuffvRSYXwK9T79bTG8iIQ= |
||||
|
-----END RSA PRIVATE KEY----- |
||||
@ -0,0 +1 @@ |
|||||
|
ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCgobUO2MxccMl8Xn1jmc7tiXfx+SNEvUtCEXtFkpsZJxYE0hZ+gBLTCt3fBSd3lgy0h6IGP3wf5XwgSfQKEADEZ8deqqaZiVToAERIg2hv6HvQGeZTCJFtGcDrijd335zPZPxgt/7Wnv//9nwsDxT7utL6S8q+1gJD2WUMDG1t7f0LEKzYcBJqbdTpUCur1J1KqmHky50FpiFrHHhXxUN1cSEbamKaWHx7vN09nwBhtgssOGpi137Cf1rMtc9DfD+8L4+fi1pQFieURENjjm9pWw92dH5qj1yQwtRLoTAlVCaAzMHbLI0Js9Bi9E8vSvGgay18KaaNjcTM6HqQQDrD nlknguyen@NN-Ubuntu |
||||
@ -0,0 +1,587 @@ |
|||||
|
#!/bin/bash |
||||
|
|
||||
|
# The MIT License (MIT) |
||||
|
# |
||||
|
# rootApostolos@swarmlab.io |
||||
|
# |
||||
|
# Permission is hereby granted, free of charge, to any person obtaining a copy |
||||
|
# of this software and associated documentation files (the "Software"), to deal |
||||
|
# in the Software without restriction, including without limitation the rights |
||||
|
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell |
||||
|
# copies of the Software, and to permit persons to whom the Software is |
||||
|
# furnished to do so, subject to the following conditions: |
||||
|
# |
||||
|
# The above copyright notice and this permission notice shall be included in all |
||||
|
# copies or substantial portions of the Software. |
||||
|
# |
||||
|
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR |
||||
|
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, |
||||
|
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE |
||||
|
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER |
||||
|
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, |
||||
|
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE |
||||
|
# SOFTWARE. |
||||
|
|
||||
|
# Origin: https://github.com/NLKNguyen/alpine-mpich |
||||
|
|
||||
|
set -e |
||||
|
|
||||
|
# shellcheck disable=SC1091 |
||||
|
#. ./.env |
||||
|
|
||||
|
|
||||
|
# ----------------------------------------------- |
||||
|
# |
||||
|
# Find Source path of swarmlab.io script |
||||
|
# |
||||
|
# ---------------------------------------------- |
||||
|
|
||||
|
|
||||
|
SOURCE="${BASH_SOURCE[0]}" |
||||
|
while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink |
||||
|
DIR="$( cd -P "$( dirname "$SOURCE" )" >/dev/null 2>&1 && pwd )" |
||||
|
SOURCE="$(readlink "$SOURCE")" |
||||
|
[[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located |
||||
|
done |
||||
|
DIR="$( cd -P "$( dirname "$SOURCE" )" >/dev/null 2>&1 && pwd )" |
||||
|
|
||||
|
|
||||
|
# ----------------------------------------------- |
||||
|
# |
||||
|
# Load Default config swarmlab.io |
||||
|
# |
||||
|
# ---------------------------------------------- |
||||
|
|
||||
|
|
||||
|
. $DIR/.env |
||||
|
|
||||
|
|
||||
|
# ----------------------------------------------- |
||||
|
# |
||||
|
# Find Working dir |
||||
|
# |
||||
|
# ---------------------------------------------- |
||||
|
|
||||
|
|
||||
|
Wdir=$(pwd) |
||||
|
|
||||
|
|
||||
|
create_dockerfile () |
||||
|
{ |
||||
|
if [ -d "$Wdir/project" ]; then |
||||
|
# ----------------------------------------------- |
||||
|
# |
||||
|
# create Dockerfile |
||||
|
# |
||||
|
# ---------------------------------------------- |
||||
|
|
||||
|
rm -f $Wdir/out.log 2> /dev/null |
||||
|
|
||||
|
error="Error:"; |
||||
|
IMAGE=$(docker inspect --type=image $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME:latest 2>&1 | tee $Wdir/out.log) |
||||
|
if search=$(grep "$error" $Wdir/out.log) |
||||
|
then |
||||
|
echo "" |
||||
|
echo ">>> Load Origin " |
||||
|
cat << EOF > $Wdir/Dockerfile |
||||
|
FROM nlknguyen/alpine-mpich:onbuild |
||||
|
WORKDIR /project |
||||
|
EOF |
||||
|
else |
||||
|
echo ">>> Load Local " |
||||
|
cat << EOF > $Wdir/Dockerfile |
||||
|
FROM localhost:5000/mpi |
||||
|
WORKDIR /project |
||||
|
EOF |
||||
|
fi |
||||
|
else |
||||
|
echo "" |
||||
|
echo "Not in Project Directory" |
||||
|
echo "A project directory should look like this" |
||||
|
echo "" |
||||
|
|
||||
|
cat <<EOF |
||||
|
├── docker-compose.yml |
||||
|
├── Dockerfile |
||||
|
├── out.log |
||||
|
├── project |
||||
|
│ └── mpi_hello_world.c |
||||
|
└── ssh |
||||
|
├── id_rsa |
||||
|
└── id_rsa.pub |
||||
|
EOF |
||||
|
echo "Change to your Project Directory And Try Again" |
||||
|
echo "" |
||||
|
exit 0 |
||||
|
fi |
||||
|
} |
||||
|
|
||||
|
create_project () |
||||
|
{ |
||||
|
|
||||
|
if [ "$Wdir" == "$HOME" ]; then |
||||
|
echo"" |
||||
|
echo "You are in Your Home directory" |
||||
|
echo "Please create a project directory" |
||||
|
echo "mkdir myproject; cd myproject; swarmlab-mpi create" |
||||
|
echo"" |
||||
|
else |
||||
|
echo "# -----------------------------------------------" |
||||
|
echo "##### Create project #####" |
||||
|
echo "# -----------------------------------------------" |
||||
|
|
||||
|
# clean old images |
||||
|
#docker rmi $(docker images -f "dangling=true" -q) |
||||
|
|
||||
|
rm -f $Wdir/out.log 2> /dev/null |
||||
|
|
||||
|
error="Error:"; |
||||
|
IMAGE=$(docker inspect --type=image $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME:latest 2>&1 | tee $Wdir/out.log) |
||||
|
if search=$(grep "$error" $Wdir/out.log) |
||||
|
then |
||||
|
echo ">>> Load Origin " |
||||
|
cat << EOF > $Wdir/Dockerfile |
||||
|
FROM nlknguyen/alpine-mpich:onbuild |
||||
|
WORKDIR /project |
||||
|
CMD export PATH=$PATH:/project |
||||
|
EOF |
||||
|
else |
||||
|
echo ">>> Load Local " |
||||
|
cat << EOF > $Wdir/Dockerfile |
||||
|
FROM localhost:5000/mpi |
||||
|
WORKDIR /project |
||||
|
CMD export PATH=$PATH:/project |
||||
|
EOF |
||||
|
fi |
||||
|
|
||||
|
|
||||
|
/bin/mkdir -p $Wdir/project |
||||
|
/bin/cp -f $DIR/project/mpi_hello_world.c $Wdir/project |
||||
|
|
||||
|
|
||||
|
cat << EOF > $Wdir/docker-compose.yml |
||||
|
version: "2" |
||||
|
|
||||
|
services: |
||||
|
registry: |
||||
|
image: registry |
||||
|
#container_name: swarmlab-registry |
||||
|
ports: |
||||
|
- "${REGISTRY_PORT}:5000" |
||||
|
|
||||
|
master: |
||||
|
image: $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME |
||||
|
#container_name: swarmlab-mpi |
||||
|
user: root |
||||
|
entrypoint: ["mpi_bootstrap", "role=master", "mpi_master_service_name=master", "mpi_worker_service_name=worker"] |
||||
|
ports: |
||||
|
- "${SSH_PORT}:22" |
||||
|
networks: |
||||
|
- net |
||||
|
volumes: |
||||
|
- $Wdir/project:/project |
||||
|
|
||||
|
|
||||
|
worker: |
||||
|
image: $REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME |
||||
|
user: root |
||||
|
entrypoint: ["mpi_bootstrap", "role=worker", "mpi_master_service_name=master", "mpi_worker_service_name=worker"] |
||||
|
networks: |
||||
|
- net |
||||
|
volumes: |
||||
|
- $Wdir/project:/project |
||||
|
|
||||
|
networks: |
||||
|
net: |
||||
|
EOF |
||||
|
|
||||
|
/bin/cp -rf $DIR/ssh $Wdir |
||||
|
|
||||
|
cat <<EOF |
||||
|
|
||||
|
Project is Ready |
||||
|
├── docker-compose.yml |
||||
|
├── Dockerfile |
||||
|
├── out.log |
||||
|
├── project |
||||
|
│ └── mpi_hello_world.c |
||||
|
└── ssh |
||||
|
├── id_rsa |
||||
|
└── id_rsa.pub |
||||
|
|
||||
|
Run: swarmlab-mpi up size=5 |
||||
|
|
||||
|
or run swarmlab-mpi help for USAGE |
||||
|
|
||||
|
EOF |
||||
|
|
||||
|
/bin/chmod -R 777 $Wdir |
||||
|
/bin/chown -R mpi.mpi $Wdir |
||||
|
|
||||
|
fi |
||||
|
} |
||||
|
|
||||
|
####################### |
||||
|
# TASK INDICATORS |
||||
|
COMMAND_UP=0 |
||||
|
COMMAND_CREATE=0 |
||||
|
COMMAND_DOWN=0 |
||||
|
COMMAND_RELOAD=0 |
||||
|
COMMAND_SCALE=0 |
||||
|
COMMAND_LOGIN=0 |
||||
|
COMMAND_EXEC=0 |
||||
|
COMMAND_LIST=0 |
||||
|
COMMAND_CLEAN=0 |
||||
|
|
||||
|
# Default values if providing empty |
||||
|
SIZE=4 |
||||
|
|
||||
|
############################################# |
||||
|
usage () |
||||
|
{ |
||||
|
echo "" |
||||
|
echo "--------------" |
||||
|
echo " SwarmLab.io " |
||||
|
echo "--------------" |
||||
|
echo "" |
||||
|
echo " USAGE: ./swarmlab-mpi [COMMAND] [OPTIONS]" |
||||
|
echo "" |
||||
|
echo " Examples of [COMMAND] can be:" |
||||
|
echo " create: create swarmlab-mpi " |
||||
|
echo " mkdir WORKdir; cd WORKdir; swarmlab-mpi create" |
||||
|
echo "" |
||||
|
echo " up: start swarmlab-mpi" |
||||
|
echo " swarmlab-mpi up size=10" |
||||
|
echo "" |
||||
|
echo " scale: resize the swarmlab-mpi" |
||||
|
echo " swarmlab-mpi scale size=30" |
||||
|
echo "" |
||||
|
echo " reload: rebuild image and distribute to nodes" |
||||
|
echo " swarmlab-mpi reload size=15" |
||||
|
echo "" |
||||
|
echo " login: login to Docker container of MPI master node for interactive usage" |
||||
|
echo " swarmlab-mpi login" |
||||
|
echo "" |
||||
|
echo " exec: execute shell command at the MPI master node" |
||||
|
echo " swarmlab-mpi exec [SHELL COMMAND]" |
||||
|
echo "" |
||||
|
echo " down: shutdown swarmlab-mpi" |
||||
|
echo " swarmlab-mpi down" |
||||
|
echo "" |
||||
|
echo " clean: remove images in the system" |
||||
|
echo " swarmlab-mpi clean" |
||||
|
echo "" |
||||
|
echo " list: show running containers of swarmlab-mpi" |
||||
|
echo " swarmlab-mpi list" |
||||
|
echo "" |
||||
|
echo " help: show this message" |
||||
|
echo " swarmlab-mpi help" |
||||
|
echo "" |
||||
|
echo " " |
||||
|
} |
||||
|
|
||||
|
HEADER=" |
||||
|
SwarmLab.io" |
||||
|
|
||||
|
clear_all () |
||||
|
{ |
||||
|
$(docker stop $(docker ps -a | grep "_master_" | awk '{print $1}')) || true |
||||
|
$(docker stop $(docker ps -a | grep "_worker_" | awk '{print $1}')) || true |
||||
|
$(docker stop $(docker ps -a | grep "_registry_" | awk '{print $1}')) || true |
||||
|
docker ps -a | grep "_registry_" | awk '{print $1}' | xargs docker container rm || true |
||||
|
docker ps -a | grep "_worker_" | awk '{print $1}' | xargs docker container rm || true |
||||
|
docker ps -a | grep "_master_" | awk '{print $1}' | xargs docker container rm || true |
||||
|
} |
||||
|
|
||||
|
down_all () |
||||
|
{ |
||||
|
printf "\\n\\n===> CLEAN UP SWARMLAB" |
||||
|
|
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose down" |
||||
|
printf "\\n" |
||||
|
|
||||
|
#docker stop swarmlab-mpi || true && docker rm swarmlab-mpi || true |
||||
|
docker-compose down |
||||
|
} |
||||
|
|
||||
|
up_registry () |
||||
|
{ |
||||
|
printf "\\n\\n===> SPIN UP REGISTRY" |
||||
|
|
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose up -d registry" |
||||
|
printf "\\n" |
||||
|
|
||||
|
#docker stop swarmlab-registry || true && docker rm swarmlab-registry || true |
||||
|
docker container prune --force |
||||
|
docker-compose up --no-recreate -d registry |
||||
|
} |
||||
|
|
||||
|
generate_ssh_keys () |
||||
|
{ |
||||
|
if [ -f ssh/id_rsa ] && [ -f ssh/id_rsa.pub ]; then |
||||
|
return 0 |
||||
|
fi |
||||
|
|
||||
|
printf "\\n\\n===> GENERATE SSH KEYS \\n\\n" |
||||
|
|
||||
|
echo "$ mkdir -p ssh/ " |
||||
|
printf "\\n" |
||||
|
mkdir -p ssh/ |
||||
|
|
||||
|
echo "$ ssh-keygen -f ssh/id_rsa -t rsa -N ''" |
||||
|
printf "\\n" |
||||
|
ssh-keygen -f ssh/id_rsa -t rsa -N '' |
||||
|
} |
||||
|
|
||||
|
build_and_push_image () |
||||
|
{ |
||||
|
printf "\\n\\n===> BUILD IMAGE" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker build -t \"$REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME\" ." |
||||
|
printf "\\n" |
||||
|
docker build -t "$REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME" . |
||||
|
|
||||
|
printf "\\n" |
||||
|
|
||||
|
printf "\\n\\n===> PUSH IMAGE TO REGISTRY" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker push \"$REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME\"" |
||||
|
printf "\\n" |
||||
|
docker push "$REGISTRY_ADDR:$REGISTRY_PORT/$IMAGE_NAME" |
||||
|
} |
||||
|
|
||||
|
up_master () |
||||
|
{ |
||||
|
printf "\\n\\n===> SPIN UP MASTER NODE" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose up -d master" |
||||
|
printf "\\n" |
||||
|
docker-compose up -d master |
||||
|
} |
||||
|
|
||||
|
|
||||
|
up_workers () |
||||
|
{ |
||||
|
printf "\\n\\n===> SPIN UP WORKER NODES" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose up -d worker" |
||||
|
printf "\\n" |
||||
|
docker-compose up -d worker |
||||
|
|
||||
|
printf "\\n" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
|
||||
|
NUM_WORKER=$((SIZE - 1)) |
||||
|
echo "$ docker-compose scale worker=$NUM_WORKER" |
||||
|
printf "\\n" |
||||
|
docker-compose scale worker=${NUM_WORKER} |
||||
|
} |
||||
|
|
||||
|
down_master () |
||||
|
{ |
||||
|
printf "\\n\\n===> TORN DOWN MASTER NODE" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
|
||||
|
echo "$ docker-compose stop master && docker-compose rm -f master" |
||||
|
printf "\\n" |
||||
|
docker-compose stop master && docker-compose rm -f master |
||||
|
} |
||||
|
|
||||
|
down_workers () |
||||
|
{ |
||||
|
printf "\\n\\n===> TORN DOWN WORKER NODES" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose stop worker && docker-compose rm -f worker" |
||||
|
printf "\\n" |
||||
|
docker-compose stop worker && docker-compose rm -f worker |
||||
|
} |
||||
|
|
||||
|
list () |
||||
|
{ |
||||
|
printf "\\n\\n===> LIST CONTAINERS" |
||||
|
printf "\\n%s\\n" "$HEADER" |
||||
|
echo "$ docker-compose ps" |
||||
|
printf "\\n" |
||||
|
docker-compose ps |
||||
|
} |
||||
|
|
||||
|
|
||||
|
exec_on_mpi_master_container () |
||||
|
{ |
||||
|
# shellcheck disable=SC2046 |
||||
|
docker exec -it -u mpi $(docker-compose ps | grep 'master'| awk 'NR==1{print $1}') "$@" |
||||
|
} |
||||
|
|
||||
|
prompt_ready () |
||||
|
{ |
||||
|
printf "\\n\\n===> SWARMLAB READY \\n\\n" |
||||
|
} |
||||
|
|
||||
|
show_instruction () |
||||
|
{ |
||||
|
echo ' ## . ' |
||||
|
echo ' ## ## ## == ' |
||||
|
echo ' ## ## ## ## ## === ' |
||||
|
echo ' /"""""""""""""""""\___/ === ' |
||||
|
echo ' ~~~ {~~ ~~~~ ~~~ ~~~~ ~~~ ~ / ===- ~~~ ' |
||||
|
echo ' \______ o __/ ' |
||||
|
echo ' \ \ __/ ' |
||||
|
echo ' \____\_______/ ' |
||||
|
echo ' ' |
||||
|
echo ' MPICH Swarmlab.io ' |
||||
|
echo '' |
||||
|
echo '==============================================================' |
||||
|
echo '' |
||||
|
|
||||
|
echo "To run MPI programs in an interative shell:" |
||||
|
echo " 1. Login to master node:" |
||||
|
echo " Using Docker through command wrapper:" |
||||
|
echo " $ swarmlab-mpi login" |
||||
|
echo "" |
||||
|
echo " Or using SSH with keys through exposed port:" |
||||
|
echo " $ ssh -o \"StrictHostKeyChecking no\" -i ssh/id_rsa -p $SSH_PORT mpi@localhost" |
||||
|
echo ' where [localhost] could be changed to the host IP of master node' |
||||
|
echo "" |
||||
|
echo " 2. Execute MPI programs inside master node, for example:" |
||||
|
echo " $ mpirun file" |
||||
|
echo " *----------------------------------------------------*" |
||||
|
echo " | Default hostfile of connected nodes in the swarmlab |" |
||||
|
echo " | is automatically updated at /etc/opt/hosts |" |
||||
|
echo " | To obtain hostfile manually: $ get_hosts > hosts |" |
||||
|
echo " * ---------------------------------------------------*" |
||||
|
echo "" |
||||
|
echo "" |
||||
|
} |
||||
|
|
||||
|
|
||||
|
|
||||
|
############################################# |
||||
|
|
||||
|
while [ "$1" != "" ]; |
||||
|
do |
||||
|
PARAM=$(echo "$1" | awk -F= '{print $1}') |
||||
|
VALUE=$(echo "$1" | awk -F= '{print $2}') |
||||
|
|
||||
|
case $PARAM in |
||||
|
help) |
||||
|
usage |
||||
|
exit |
||||
|
;; |
||||
|
-i) |
||||
|
show_instruction |
||||
|
exit |
||||
|
;; |
||||
|
|
||||
|
login) |
||||
|
COMMAND_LOGIN=1 |
||||
|
;; |
||||
|
|
||||
|
exec) |
||||
|
COMMAND_EXEC=1 |
||||
|
shift # the rest is the shell command to run in the node |
||||
|
SHELL_COMMAND="$*" |
||||
|
break # end while loop |
||||
|
;; |
||||
|
|
||||
|
up) |
||||
|
COMMAND_UP=1 |
||||
|
;; |
||||
|
|
||||
|
create) |
||||
|
COMMAND_CREATE=1 |
||||
|
;; |
||||
|
|
||||
|
down) |
||||
|
COMMAND_DOWN=1 |
||||
|
;; |
||||
|
|
||||
|
reload) |
||||
|
COMMAND_RELOAD=1 |
||||
|
;; |
||||
|
|
||||
|
scale) |
||||
|
COMMAND_SCALE=1 |
||||
|
;; |
||||
|
|
||||
|
list) |
||||
|
COMMAND_LIST=1 |
||||
|
;; |
||||
|
|
||||
|
clean) |
||||
|
COMMAND_CLEAN=1 |
||||
|
;; |
||||
|
|
||||
|
size) |
||||
|
[ "$VALUE" ] && SIZE=$VALUE |
||||
|
;; |
||||
|
|
||||
|
*) |
||||
|
echo "ERROR: unknown parameter \"$PARAM\"" |
||||
|
usage |
||||
|
exit 1 |
||||
|
;; |
||||
|
esac |
||||
|
shift |
||||
|
done |
||||
|
|
||||
|
|
||||
|
if [ $COMMAND_UP -eq 1 ]; then |
||||
|
create_dockerfile |
||||
|
down_all |
||||
|
clear_all |
||||
|
up_registry |
||||
|
generate_ssh_keys |
||||
|
build_and_push_image |
||||
|
up_master |
||||
|
up_workers |
||||
|
|
||||
|
prompt_ready |
||||
|
show_instruction |
||||
|
|
||||
|
elif [ $COMMAND_CREATE -eq 1 ]; then |
||||
|
create_project |
||||
|
|
||||
|
elif [ $COMMAND_DOWN -eq 1 ]; then |
||||
|
down_all |
||||
|
clear_all |
||||
|
|
||||
|
elif [ $COMMAND_CLEAN -eq 1 ]; then |
||||
|
clear_all |
||||
|
|
||||
|
|
||||
|
elif [ $COMMAND_SCALE -eq 1 ]; then |
||||
|
create_dockerfile |
||||
|
down_master |
||||
|
down_workers |
||||
|
up_master |
||||
|
up_workers |
||||
|
|
||||
|
prompt_ready |
||||
|
show_instruction |
||||
|
|
||||
|
elif [ $COMMAND_RELOAD -eq 1 ]; then |
||||
|
create_dockerfile |
||||
|
down_master |
||||
|
down_workers |
||||
|
build_and_push_image |
||||
|
up_master |
||||
|
up_workers |
||||
|
|
||||
|
prompt_ready |
||||
|
show_instruction |
||||
|
|
||||
|
elif [ $COMMAND_LOGIN -eq 1 ]; then |
||||
|
exec_on_mpi_master_container /bin/sh |
||||
|
|
||||
|
elif [ $COMMAND_EXEC -eq 1 ]; then |
||||
|
create_dockerfile |
||||
|
exec_on_mpi_master_container ash -c "${SHELL_COMMAND}" |
||||
|
|
||||
|
elif [ $COMMAND_LIST -eq 1 ]; then |
||||
|
list |
||||
|
else |
||||
|
usage |
||||
|
fi |
||||
|
|
||||
Loading…
Reference in new issue