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xelatex thesis

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  1. 21
      Dockerfile
  2. 2
      Dockerfile.build
  3. 544
      cls/MastersDoctoralThesis.cls
  4. 2
      cls/README
  5. BIN
      docs/Appendices/.DS_Store
  6. 25
      docs/Appendices/AppendixA.tex
  7. 7
      docs/Appendices/AppendixTemplate.tex
  8. BIN
      docs/Chapters/.DS_Store
  9. 340
      docs/Chapters/Chapter1.tex
  10. 35
      docs/Chapters/ChapterTemplate.tex
  11. BIN
      docs/Figures/Electron.pdf
  12. BIN
      docs/main.pdf
  13. 316
      docs/main.tex
  14. 3
      extrapackages
  15. 1
      fonts-extra/README
  16. 8
      get-swarmlab.keys
  17. 2
      run-custom.sh
  18. 15
      run.sh
  19. 58
      setup.sh

21
Dockerfile
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FROM hub.swarmlab.io:5480/xelatex-base:latest
LABEL \
org.opencontainers.image.title="Docker Image of TeXLive" \
org.opencontainers.image.authors="Swarmlab.io <rootapostolos@swarmlab.io>"
ENV PATH=/usr/local/texlive/bin/x86_64-linuxmusl:/usr/local/texlive/2020/bin/x86_64-linuxmusl:${PATH}
COPY \
setup.sh \
extrapackages \
/
COPY fonts-extra/ /usr/share/fonts
COPY cls/ /usr/local/texlive/texmf-local/tex/latex/local
RUN /setup.sh
WORKDIR /home
VOLUME ["/home"]
CMD ["-f","/dev/null"]

2
Dockerfile.build
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docker build -f Dockerfile -t xelatex-thesis-custom .

544
cls/MastersDoctoralThesis.cls
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Masters/Doctoral Thesis
% Class File
% Version 1.6 (27/8/17)
%
% This class was downloaded from:
% http://www.LaTeXTemplates.com
%
% Authors:
% Vel (vel@latextemplates.com)
% Johannes Böttcher
%
% Notes:
% 1) This class file defines the structure and layout of the template file (main.tex).
% 2) It has been written in such a way that under most circumstances you should not need
% to edit it; updating it to a newer version will be harder. If you do make changes, please change the name of
% the file and add comments to make your changes more visible.
%
% Class license:
% LPPL v1.3c (http://www.latex-project.org/lppl)
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%----------------------------------------------------------------------------------------
% CLASS DEFINITION AND PARAMETERS
%----------------------------------------------------------------------------------------
\NeedsTeXFormat{LaTeX2e}[1996/12/01]
\newcommand{\classname}{MastersDoctoralThesis}
\ProvidesClass{\classname}[2017/08/27 v1.6 LaTeXTemplates.com]
\providecommand{\baseclass}{book}
\RequirePackage{etoolbox}
\RequirePackage{xparse}
\newbool{nolistspace}
\newbool{chapteroneline}
\newbool{listtoc}
\newbool{toctoc}
\newbool{parskip}
\newbool{hyperrefsupport}
\booltrue{hyperrefsupport}
\newbool{headsepline}
\newbool{consistentlayout}
\DeclareOption{nohyperref}{\boolfalse{hyperrefsupport}}
\DeclareOption{nolistspacing}{\booltrue{nolistspace}}
\DeclareOption{liststotoc}{\booltrue{listtoc}}
\DeclareOption{chapterinoneline}{\booltrue{chapteroneline}}
\DeclareOption{toctotoc}{\booltrue{toctoc}}
\DeclareOption{parskip}{\booltrue{parskip}}
\DeclareOption{headsepline}{\booltrue{headsepline}}
\DeclareOption{consistentlayout}{\booltrue{consistentlayout}}
\DeclareOption*{\PassOptionsToClass{\CurrentOption}{\baseclass}}
\ProcessOptions\relax
\LoadClass{\baseclass}
% Simple interface for the user to customize the chapter titles
\ProvideDocumentCommand{\abovechapterskip}{}{\vspace*{20pt}}
\ProvideDocumentCommand{\chapterbelowskip}{}{\vspace*{40pt}}
\ProvideDocumentCommand{\chapterinbetweenskip}{}{\vspace*{20pt}}
\ProvideDocumentCommand{\autodot}{}{}
\ProvideDocumentCommand{\mdtChapapp}{}{}
\ProvideDocumentCommand{\chapteralign}{}{\raggedright}
\ProvideDocumentCommand{\chapterfont}{}{\Huge\bfseries}
\ProvideDocumentCommand{\chapterprefixfont}{}{\LARGE\bfseries}
\DeclareDocumentCommand{\@makechapterhead}{ m }{%
\abovechapterskip
{\parindent \z@ \chapteralign \normalfont
\ifnum \c@secnumdepth >\m@ne
\if@mainmatter
\ifbool{chapteroneline}{%
\chapterfont \mdtChapapp\thechapter\autodot\enspace
}{%
\chapterprefixfont \@chapapp\space \thechapter
\par\nobreak
\chapterinbetweenskip
}%
\fi
\fi
\interlinepenalty\@M%
\chapterfont #1\par\nobreak
\chapterbelowskip
}
\thispagestyle{\chapter@p@gestyle}
}
\def\@makeschapterhead#1{%
\abovechapterskip
{\parindent \z@ \chapteralign
\normalfont
\interlinepenalty\@M
\chapterfont #1\par\nobreak
\chapterbelowskip
}
\thispagestyle{\chapter@p@gestyle}
}
% Addchap provides unnumbered chapters with an entry in the table of contents as well as an updated header
\ProvideDocumentCommand{\addchap}{ s o m }{%
\chapter*{#3}%
\markboth{}{}%
\IfBooleanTF{#1}{%
}{%
\IfNoValueTF{#2}{%
\addchaptertocentry{#3}%
\markboth{\MakeMarkcase{#3}}{\MakeMarkcase{#3}}%
}{%
\addchaptertocentry{#2}%
\markboth{\MakeMarkcase{#2}}{\MakeMarkcase{#2}}%
}%
}%
}%
\ProvideDocumentCommand{\addsec}{ s o m }{%
\section*{#3}%
\markright{}%
\IfBooleanTF{#1}{%
}{%
\IfNoValueTF{#2}{%
\addcontentsline{toc}{section}{#3}%
\markright{\MakeMarkcase{#3}}%%
}{%
\addcontentsline{toc}{section}{#2}%
\markright{\MakeMarkcase{#2}}%
}%
}%
}%
%----------------------------------------------------------------------------------------
% CLASS OPTIONS
%----------------------------------------------------------------------------------------
\ifbool{parskip}{\RequirePackage{parskip}} % If the parskip option is passed to the class, require the parskip package
\ifbool{listtoc}{% If the liststotoc option has been passed to the class, add the lists to the table of contents
\patchcmd{\listoftables}{\@starttoc{lot}}{%
\addchaptertocentry{\listtablename}\@starttoc{lot}%
}{}{}%
\patchcmd{\listoffigures}{\@starttoc{lof}}{%
\addchaptertocentry{\listfigurename}\@starttoc{lof}%
}{}{}%
}
\ifbool{toctoc}{% If the toctotoc options has been passed to the class, add the table of contents to the table of contents
\patchcmd{\tableofcontents}{\@starttoc{toc}%
}{%
\addchaptertocentry{\contentsname}\@starttoc{toc}}{}{}%
}
\patchcmd{\tableofcontents}{\MakeUppercase}{\MakeMarkcase}{}{}
\patchcmd{\tableofcontents}{\MakeUppercase}{\MakeMarkcase}{}{}
\patchcmd{\listoffigures}{\MakeUppercase}{\MakeMarkcase}{}{}
\patchcmd{\listoffigures}{\MakeUppercase}{\MakeMarkcase}{}{}
\patchcmd{\listoftables}{\MakeUppercase}{\MakeMarkcase}{}{}
\patchcmd{\listoftables}{\MakeUppercase}{\MakeMarkcase}{}{}
% If the option `nolistspacing' is given, the spacing in the different lists is reduced to single spacing. This option is only useful, if the spacing of the document has been changed to onehalfspacing or doublespacing.
\ifbool{nolistspace}{
\patchcmd{\listoffigures}{%
\@starttoc{lof}
}{%
\begingroup%
\singlespace\@starttoc{lof}\endgroup%
}{}{}%
\patchcmd{\listoftables}{%
\@starttoc{lot}
}{%
\begingroup%
\singlespace\@starttoc{lot}\endgroup%
}{}{}%
\patchcmd{\tableofcontents}{%
\@starttoc{toc}
}{%
\begingroup%
\singlespace\@starttoc{toc}\endgroup%
}{}{}%
}{}
%----------------------------------------------------------------------------------------
% REQUIRED PACKAGES
%----------------------------------------------------------------------------------------
\RequirePackage{babel} % Required for automatically changing names of document elements to languages besides english
\RequirePackage{scrbase} % Required for handling language-dependent names of sections/document elements
\RequirePackage{scrhack} % Loads fixes for various packages
\RequirePackage{setspace} % Required for changing line spacing
\RequirePackage{longtable} % Required for tables that span multiple pages (used in the symbols, abbreviations and physical constants pages)
\RequirePackage{siunitx} % Required for \SI commands
\RequirePackage{graphicx} % Required to include images
\graphicspath{{Figures/}{./}} % Specifies where to look for included images
\RequirePackage{booktabs} % Required for better table rules
\RequirePackage{caption} % Required for customising the captions
\captionsetup{justification=centerlast,font=small,labelfont=sc,margin=50pt}
%----------------------------------------------------------------------------------------
% DEFINE CUSTOM THESIS INFORMATION COMMANDS
%----------------------------------------------------------------------------------------
\NewDocumentCommand{\thesistitle} { o m }{%
\IfValueTF{#1}{\def\shorttitle{#1}}{\def\shorttitle{#2}}%
\def\@title{#2}%
\def\ttitle{#2}%
}
\DeclareDocumentCommand{\author}{m}{\newcommand{\authorname}{#1}\renewcommand{\@author}{#1}}
\NewDocumentCommand{\supervisor}{m}{\newcommand{\supname}{#1}}
\NewDocumentCommand{\examiner}{m}{\newcommand{\examname}{#1}}
\NewDocumentCommand{\degree}{m}{\newcommand{\degreename}{#1}}
\NewDocumentCommand{\addresses}{m}{\newcommand{\addressname}{#1}}
\NewDocumentCommand{\university}{m}{\newcommand{\univname}{#1}}
\NewDocumentCommand{\department}{m}{\newcommand{\deptname}{#1}}
\NewDocumentCommand{\group}{m}{\newcommand{\groupname}{#1}}
\NewDocumentCommand{\faculty}{m}{\newcommand{\facname}{#1}}
\NewDocumentCommand{\subject}{m}{\newcommand{\subjectname}{#1}}
\NewDocumentCommand{\keywords}{m}{\newcommand{\keywordnames}{#1}}
\newcommand{\checktoopen}{% New command to move content to the next page which prints to the next odd page if twosided mode is active
\if@openright\cleardoublepage\else\clearpage\fi
\ifdef{\phantomsection}{\phantomsection}{}% The \phantomsection command is necessary for hyperref to jump to the correct page
}
\NewDocumentCommand{\bhrule}{}{\typeout{--------------------}}
\NewDocumentCommand{\tttypeout}{m}{\bhrule\typeout{\space #1}\bhrule}
\newcommand{\HRule}{\rule{.9\linewidth}{.6pt}} % New command to make the lines in the title page
\newcommand{\decoRule}{\rule{.8\textwidth}{.4pt}} % New command for a rule to be used under figures
\setcounter{tocdepth}{3} % The depth to which the document sections are printed to the table of contents
\ProvideDocumentCommand{\addchaptertocentry}{ m }{%
\addcontentsline{toc}{chapter}{#1}%
}
%----------------------------------------------------------------------------------------
% COLOURS
%----------------------------------------------------------------------------------------
\usepackage{xcolor} % Required for specifying custom colours
\colorlet{mdtRed}{red!50!black}
%----------------------------------------------------------------------------------------
% MARGINS
%----------------------------------------------------------------------------------------
\RequirePackage{geometry}
\geometry{
headheight=4ex,
includehead,
includefoot
}
\raggedbottom
%----------------------------------------------------------------------------------------
% PENALTIES
%----------------------------------------------------------------------------------------
\doublehyphendemerits=10000 % No consecutive line hyphens
\brokenpenalty=10000 % No broken words across columns/pages
\widowpenalty=9999 % Almost no widows at bottom of page
\clubpenalty=9999 % Almost no orphans at top of page
\interfootnotelinepenalty=9999 % Almost never break footnotes
%----------------------------------------------------------------------------------------
% HEADERS AND FOOTERS
%----------------------------------------------------------------------------------------
\RequirePackage[markcase=used]{scrlayer-scrpage}
\providepairofpagestyles{thesisSimple}{%
\clearpairofpagestyles%
\automark[chapter]{chapter}
\ihead{\headmark}% Inner header
\ohead[\pagemark]{\pagemark}% Outer header
}
\ifoot{}% Inner footer
\ofoot{}% Outer footer
\pagestyle{thesisSimple}
\providepairofpagestyles[thesisSimple]{thesis}{%
\automark*[section]{}%
}
\providepairofpagestyles[thesisSimple]{review}{%
\ofoot[\shorttitle/\authorname]{\shorttitle/\authorname}
\ifoot[\today]{\today}
}
\pagestyle{thesis}
\ifbool{headsepline}{\KOMAoption{headsepline}{true}}{}
\PreventPackageFromLoading[\ClassError{\classname}{Package `fancyhdr' is
incompatible\MessageBreak with this class}{The pagesyles are defined
using package `scrlayer-scrpage', please consult the\MessageBreak
KOMA-script documentation for details.}]{fancyhdr}
\newcommand{\blank@p@gestyle}{empty}
\newcommand{\chapter@p@gestyle}{plain}
\NewDocumentCommand{\blankpagestyle}{ m }{%
\ClassWarning{\classname}{\string\blankpagestyle\space is
obsolete,\MessageBreak use \string\setblankpagestyle \space instead}\renewcommand{\blank@p@gestyle}{}{#1}
}
\NewDocumentCommand{\setblankpagestyle}{ m }{\renewcommand{\blank@p@gestyle}{#1}}
\NewDocumentCommand{\setchapterpagestyle}{ m }{\renewcommand{\chapter@p@gestyle}{#1}}
\DeclareDocumentCommand\cleardoublepage{}{\clearpage\if@twoside \ifodd\c@page\else
\hbox{}
\thispagestyle{\blank@p@gestyle}
\newpage
\if@twocolumn\hbox{}\newpage\fi\fi\fi%
}
%----------------------------------------------------------------------------------------
% ABBREVIATIONS PAGE DESIGN
%----------------------------------------------------------------------------------------
\newcommand{\abbrevname}{List of Abbreviations}
\providecaptionname{english,british,american}{\abbrevname}{List of Abbreviations}
\providecaptionname{ngerman,german,austrian,naustrian}{\abbrevname}{Abk\"urzungsverzeichnis}
\NewDocumentEnvironment{abbreviations}{ m }{%
\ifbool{nolistspace}{\begingroup\singlespacing}{}
\ifbool{listtoc}{\addchap{\abbrevname}}{\addchap*{\abbrevname}}
\begin{longtable}{#1}
}{%
\end{longtable}
\addtocounter{table}{-1}% Don't count this table as one of the document tables
\ifbool{nolistspace}{\endgroup}{}
}
%----------------------------------------------------------------------------------------
% ABSTRACT PAGE DESIGN
%----------------------------------------------------------------------------------------
\DeclareDocumentCommand{\abstractauthorfont}{}{}
\DeclareDocumentCommand{\abstracttitlefont}{}{}
\newcommand{\byname}{by}
\newcommand{\abstractname}{Abstract}
\providecaptionname{german,ngerman,austrian,naustrian}{\byname}{von}
\providecaptionname{american,australian,british,canadian,english,newzealand,UKenglish,USenglish}{\byname}{by}
\ifbool{consistentlayout}{
\DeclareDocumentEnvironment{abstract}{ O{} }{%
\addchap*{\abstractname}%
{\chapteralign\normalsize\abstractauthorfont \authorname \par}% Author name
\vspace{\baselineskip}
{\chapteralign\parbox{.7\linewidth}{\chapteralign\normalsize\itshape\abstracttitlefont\@title}\par}% Thesis title
\bigskip\noindent\ignorespaces
}%
{}%end alt-abstract
}{%
\DeclareDocumentEnvironment{abstract}{ O{\null\vfill} }{
\checktoopen
\tttypeout{\abstractname}
#1%added to be able to have abstract more than one page long
\thispagestyle{plain}
\begin{center}
{\normalsize \MakeUppercase{\univname} \par}% University name in capitals
\bigskip
{\huge\textit{\abstractname} \par}
\bigskip
{\normalsize \facname \par}% Faculty name
{\normalsize \deptname \par}% Department name
\bigskip
{\normalsize \degreename\par}% Degree name
\bigskip
{\normalsize\bfseries \@title \par}% Thesis title
\medskip
{\normalsize \byname{} \authorname \par}% Author name
\bigskip
\end{center}
}
{
\vfill\null
}
}
\DeclareDocumentEnvironment{extraAbstract}{ O{\null\vfill} }{
\checktoopen
\tttypeout{\abstractname}
#1%added to be able to have abstract more than one page long
\thispagestyle{empty}
\begin{center}
{\normalsize \MakeUppercase{\univname} \par}% University name in capitals
\bigskip
{\huge\textit{\abstractname} \par}
\bigskip
{\normalsize \facname \par}% Faculty name
{\normalsize \deptname \par}% Department name
\bigskip
{\normalsize \degreename\par}% Degree name
\bigskip
{\normalsize\bfseries \@title \par}% Thesis title
\medskip
{\normalsize \byname{} \authorname \par}% Author name
\bigskip
\end{center}
}
{
\vfill\null
}
%----------------------------------------------------------------------------------------
% ACKNOWLEDGEMENTS PAGE DESIGN
%----------------------------------------------------------------------------------------
\usepackage{xcolor}
\colorlet{mdtRed}{red!50!black}
\newcommand{\acknowledgementname}{Acknowledgements}
\providecaptionname{american,australian,british,canadian,english,newzealand,UKenglish,USenglish} {\acknowledgementname}{Acknowledgements} % Acknowledgement text for English countries
\providecaptionname{german,ngerman,austrian,naustrian}{\acknowledgementname}{Danksagung} % Acknowledgement text for Germanic countries
\ifbool{consistentlayout}{
\DeclareDocumentEnvironment{acknowledgements}{}{%
\tttypeout{\acknowledgementname}
\addchap*{\acknowledgementname}
}
}
{
\DeclareDocumentEnvironment{acknowledgements}{}{%
\checktoopen
\tttypeout{\acknowledgementname}
\thispagestyle{plain}
\begin{center}{\huge\textit{\acknowledgementname}\par}\end{center}
}
{
\vfil\vfil\null
}
}
%----------------------------------------------------------------------------------------
% DECLARATION PAGE DESIGN
%----------------------------------------------------------------------------------------
\newcommand{\authorshipname}{Declaration of Authorship}
\providecaptionname{american,australian,british,canadian,english,newzealand,UKenglish,USenglish}{\authorshipname}{Declaration of Authorship} % Declaration of Authorship text for English countries
\providecaptionname{german,ngerman,austrian,naustrian}{\authorshipname}{Eidesstattliche Erkl\"arung} % Declaration of Authorship text for Germanic countries
\ifbool{consistentlayout}{
\DeclareDocumentEnvironment{declaration}{}{
\addchap*{\authorshipname}
}{}%
}{
\DeclareDocumentEnvironment{declaration}{}{
\checktoopen
\tttypeout{\authorshipname}
\thispagestyle{plain}
\null\vfil
{\noindent\huge\bfseries\authorshipname\par\vspace{10pt}}
}{}
}
%----------------------------------------------------------------------------------------
% DEDICATION PAGE DESIGN
%----------------------------------------------------------------------------------------
\ifbool{consistentlayout}{
\DeclareDocumentCommand{\dedicatory}{
m O{\vspace*{.7\textheight} } }{
\checktoopen\tttypeout{Dedicatory}
\markboth{}{}
#2
{\hfill\parbox{.4\textwidth}{\flushright#1\par}}
}
}{
\newcommand\dedicatory[1]{
\checktoopen
\tttypeout{Dedicatory}
\null\vfil
\thispagestyle{plain}
\begin{center}{\Large\slshape #1}\end{center}
\vfil\null
}
}
%----------------------------------------------------------------------------------------
% PHYSICAL CONSTANTS PAGE DESIGN
%----------------------------------------------------------------------------------------
\newcommand{\constantsname}{Physical Constants}
\providecaptionname{english,british,american}{\constantsname}{Physical Constants}
\providecaptionname{ngerman,german,austrian,naustrian}{\constantsname}{Physikalische Konstanten}
\NewDocumentEnvironment{constants}{ m }{%
\ifbool{nolistspace}{\begingroup\singlespacing}{}
\ifbool{listtoc}{\addchap{\constantsname}}{\addchap*{\constantsname}}
\begin{longtable}{#1}
}{%
\end{longtable}
\addtocounter{table}{-1}% Don't count this table as one of the document tables
\ifbool{nolistspace}{\endgroup}{}
}
%----------------------------------------------------------------------------------------
% SYMBOLS PAGE DESIGN
%----------------------------------------------------------------------------------------
\newcommand{\symbolsname}{List of Symbols}
\providecaptionname{english,british,american}{\symbolsname}{List of Symbols}
\providecaptionname{ngerman,german,austrian,naustrian}{\symbolsname}{Symbolverzeichnis}
\NewDocumentEnvironment{symbols}{ m }{%
\ifbool{nolistspace}{\begingroup\singlespacing}{}
\ifbool{listtoc}{\addchap{\symbolsname}}{\addchap*{\symbolsname}}
\begin{longtable}{#1}
}{%
\end{longtable}
\addtocounter{table}{-1}% Don't count this table as one of the document tables
\ifbool{nolistspace}{\endgroup}{}
}
%----------------------------------------------------------------------------------------
\ifbool{hyperrefsupport}{% If the nohyperref class option has not been specified
\AtEndPreamble{\RequirePackage{hyperref}
\hypersetup{pdfpagemode={UseOutlines},
bookmarksopen=true,
bookmarksopenlevel=0,
hypertexnames=false,
colorlinks=true,% Set to false to disable coloring links
citecolor=magenta,% The color of citations
linkcolor=red,% The color of references to document elements (sections, figures, etc)
urlcolor=mdtRed,% The color of hyperlinks (URLs)
pdfstartview={FitV},
unicode,
breaklinks=true,
}
\pdfstringdefDisableCommands{% If there is an explicit linebreak in a section heading (or anything printed to the pdf-bookmarks), it is replaced by a space
\let\\\space%
}
}
}{%nothing
}
%----------------------------------------------------------------------------------------
\endinput
% lazyLizardTracer

2
cls/README
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Write a new class from scratch
and save it here

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docs/Appendices/.DS_Store
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docs/Appendices/AppendixA.tex
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% Appendix A
\chapter{Frequently Asked Questions} % Main appendix title
\label{AppendixA} % For referencing this appendix elsewhere, use \ref{AppendixA}
\section{How do I change the colors of links?}
The color of links can be changed to your liking using:
{\small\verb!\hypersetup{urlcolor=red}!}, or
{\small\verb!\hypersetup{citecolor=green}!}, or
{\small\verb!\hypersetup{allcolor=blue}!}.
\noindent If you want to completely hide the links, you can use:
{\small\verb!\hypersetup{allcolors=.}!}, or even better:
{\small\verb!\hypersetup{hidelinks}!}.
\noindent If you want to have obvious links in the PDF but not the printed text, use:
{\small\verb!\hypersetup{colorlinks=false}!}.

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docs/Appendices/AppendixTemplate.tex
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% Appendix Template
\chapter{Appendix Title Here} % Main appendix title
\label{AppendixX} % Change X to a consecutive letter; for referencing this appendix elsewhere, use \ref{AppendixX}
Write your Appendix content here.

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docs/Chapters/.DS_Store
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docs/Chapters/Chapter1.tex
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% Chapter 1
\chapter{Πρώτο} % Main chapter title
\label{Chapter1} % For referencing the chapter elsewhere, use \ref{Chapter1}
%----------------------------------------------------------------------------------------
% Define some commands to keep the formatting separated from the content
\newcommand{\keyword}[1]{\textbf{#1}}
\newcommand{\tabhead}[1]{\textbf{#1}}
\newcommand{\code}[1]{\texttt{#1}}
\newcommand{\file}[1]{\texttt{\bfseries#1}}
\newcommand{\option}[1]{\texttt{\itshape#1}}
%----------------------------------------------------------------------------------------
\section{Welcome and Thank You}
\begin{equation}
α^2 + β^2 = γ^2
\end{equation}
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
Κείμενο κείμενο Greek
Κείμενο κείμενο
%----------------------------------------------------------------------------------------
\section{Learning \LaTeX{}}
\LaTeX{} is not a \textsc{wysiwyg} (What You See is What You Get) program, unlike word processors such as Microsoft Word or Apple's Pages. Instead, a document written for \LaTeX{} is actually a simple, plain text file that contains \emph{no formatting}. You tell \LaTeX{} how you want the formatting in the finished document by writing in simple commands amongst the text, for example, if I want to use \emph{italic text for emphasis}, I write the \verb|\emph{text}| command and put the text I want in italics in between the curly braces. This means that \LaTeX{} is a \enquote{mark-up} language, very much like HTML.
\subsection{A (not so short) Introduction to \LaTeX{}}
If you are new to \LaTeX{}, there is a very good eBook -- freely available online as a PDF file -- called, \enquote{The Not So Short Introduction to \LaTeX{}}. The book's title is typically shortened to just \emph{lshort}. You can download the latest version (as it is occasionally updated) from here:
\url{http://www.ctan.org/tex-archive/info/lshort/english/lshort.pdf}
It is also available in several other languages. Find yours from the list on this page: \url{http://www.ctan.org/tex-archive/info/lshort/}
It is recommended to take a little time out to learn how to use \LaTeX{} by creating several, small `test' documents, or having a close look at several templates on:\\
\url{http://www.LaTeXTemplates.com}\\
Making the effort now means you're not stuck learning the system when what you \emph{really} need to be doing is writing your thesis.
\subsection{A Short Math Guide for \LaTeX{}}
If you are writing a technical or mathematical thesis, then you may want to read the document by the AMS (American Mathematical Society) called, \enquote{A Short Math Guide for \LaTeX{}}. It can be found online here:
\url{http://www.ams.org/tex/amslatex.html}
under the \enquote{Additional Documentation} section towards the bottom of the page.
\subsection{Common \LaTeX{} Math Symbols}
There are a multitude of mathematical symbols available for \LaTeX{} and it would take a great effort to learn the commands for them all. The most common ones you are likely to use are shown on this page:
\url{http://www.sunilpatel.co.uk/latex-type/latex-math-symbols/}
You can use this page as a reference or crib sheet, the symbols are rendered as large, high quality images so you can quickly find the \LaTeX{} command for the symbol you need.
\subsection{\LaTeX{} on a Mac}
The \LaTeX{} distribution is available for many systems including Windows, Linux and Mac OS X. The package for OS X is called MacTeX and it contains all the applications you need -- bundled together and pre-customized -- for a fully working \LaTeX{} environment and work flow.
MacTeX includes a custom dedicated \LaTeX{} editor called TeXShop for writing your `\file{.tex}' files and BibDesk: a program to manage your references and create your bibliography section just as easily as managing songs and creating playlists in iTunes.
%----------------------------------------------------------------------------------------
\section{Getting Started with this Template}
If you are familiar with \LaTeX{}, then you should explore the directory structure of the template and then proceed to place your own information into the \emph{THESIS INFORMATION} block of the \file{main.tex} file. You can then modify the rest of this file to your unique specifications based on your degree/university. Section \ref{FillingFile} on page \pageref{FillingFile} will help you do this. Make sure you also read section \ref{ThesisConventions} about thesis conventions to get the most out of this template.
If you are new to \LaTeX{} it is recommended that you carry on reading through the rest of the information in this document.
Before you begin using this template you should ensure that its style complies with the thesis style guidelines imposed by your institution. In most cases this template style and layout will be suitable. If it is not, it may only require a small change to bring the template in line with your institution's recommendations. These modifications will need to be done on the \file{MastersDoctoralThesis.cls} file.
\subsection{About this Template}
This \LaTeX{} Thesis Template is originally based and created around a \LaTeX{} style file created by Steve R.\ Gunn from the University of Southampton (UK), department of Electronics and Computer Science. You can find his original thesis style file at his site, here:
\url{http://www.ecs.soton.ac.uk/~srg/softwaretools/document/templates/}
Steve's \file{ecsthesis.cls} was then taken by Sunil Patel who modified it by creating a skeleton framework and folder structure to place the thesis files in. The resulting template can be found on Sunil's site here:
\url{http://www.sunilpatel.co.uk/thesis-template}
Sunil's template was made available through \url{http://www.LaTeXTemplates.com} where it was modified many times based on user requests and questions. Version 2.0 and onwards of this template represents a major modification to Sunil's template and is, in fact, hardly recognisable. The work to make version 2.0 possible was carried out by \href{mailto:vel@latextemplates.com}{Vel} and Johannes Böttcher.
%----------------------------------------------------------------------------------------
\section{What this Template Includes}
\subsection{Folders}
This template comes as a single zip file that expands out to several files and folders. The folder names are mostly self-explanatory:
\keyword{Appendices} -- this is the folder where you put the appendices. Each appendix should go into its own separate \file{.tex} file. An example and template are included in the directory.
\keyword{Chapters} -- this is the folder where you put the thesis chapters. A thesis usually has about six chapters, though there is no hard rule on this. Each chapter should go in its own separate \file{.tex} file and they can be split as:
\begin{itemize}
\item Chapter 1: Introduction to the thesis topic
\item Chapter 2: Background information and theory
\item Chapter 3: (Laboratory) experimental setup
\item Chapter 4: Details of experiment 1
\item Chapter 5: Details of experiment 2
\item Chapter 6: Discussion of the experimental results
\item Chapter 7: Conclusion and future directions
\end{itemize}
This chapter layout is specialised for the experimental sciences, your discipline may be different.
\keyword{Figures} -- this folder contains all figures for the thesis. These are the final images that will go into the thesis document.
\subsection{Files}
Included are also several files, most of them are plain text and you can see their contents in a text editor. After initial compilation, you will see that more auxiliary files are created by \LaTeX{} or BibTeX and which you don't need to delete or worry about:
\keyword{example.bib} -- this is an important file that contains all the bibliographic information and references that you will be citing in the thesis for use with BibTeX. You can write it manually, but there are reference manager programs available that will create and manage it for you. Bibliographies in \LaTeX{} are a large subject and you may need to read about BibTeX before starting with this. Many modern reference managers will allow you to export your references in BibTeX format which greatly eases the amount of work you have to do.
\keyword{MastersDoctoralThesis.cls} -- this is an important file. It is the class file that tells \LaTeX{} how to format the thesis.
\keyword{main.pdf} -- this is your beautifully typeset thesis (in the PDF file format) created by \LaTeX{}. It is supplied in the PDF with the template and after you compile the template you should get an identical version.
\keyword{main.tex} -- this is an important file. This is the file that you tell \LaTeX{} to compile to produce your thesis as a PDF file. It contains the framework and constructs that tell \LaTeX{} how to layout the thesis. It is heavily commented so you can read exactly what each line of code does and why it is there. After you put your own information into the \emph{THESIS INFORMATION} block -- you have now started your thesis!
Files that are \emph{not} included, but are created by \LaTeX{} as auxiliary files include:
\keyword{main.aux} -- this is an auxiliary file generated by \LaTeX{}, if it is deleted \LaTeX{} simply regenerates it when you run the main \file{.tex} file.
\keyword{main.bbl} -- this is an auxiliary file generated by BibTeX, if it is deleted, BibTeX simply regenerates it when you run the \file{main.aux} file. Whereas the \file{.bib} file contains all the references you have, this \file{.bbl} file contains the references you have actually cited in the thesis and is used to build the bibliography section of the thesis.
\keyword{main.blg} -- this is an auxiliary file generated by BibTeX, if it is deleted BibTeX simply regenerates it when you run the main \file{.aux} file.
\keyword{main.lof} -- this is an auxiliary file generated by \LaTeX{}, if it is deleted \LaTeX{} simply regenerates it when you run the main \file{.tex} file. It tells \LaTeX{} how to build the \emph{List of Figures} section.
\keyword{main.log} -- this is an auxiliary file generated by \LaTeX{}, if it is deleted \LaTeX{} simply regenerates it when you run the main \file{.tex} file. It contains messages from \LaTeX{}, if you receive errors and warnings from \LaTeX{}, they will be in this \file{.log} file.
\keyword{main.lot} -- this is an auxiliary file generated by \LaTeX{}, if it is deleted \LaTeX{} simply regenerates it when you run the main \file{.tex} file. It tells \LaTeX{} how to build the \emph{List of Tables} section.
\keyword{main.out} -- this is an auxiliary file generated by \LaTeX{}, if it is deleted \LaTeX{} simply regenerates it when you run the main \file{.tex} file.
So from this long list, only the files with the \file{.bib}, \file{.cls} and \file{.tex} extensions are the most important ones. The other auxiliary files can be ignored or deleted as \LaTeX{} and BibTeX will regenerate them.
%----------------------------------------------------------------------------------------
\section{Filling in Your Information in the \file{main.tex} File}\label{FillingFile}
You will need to personalise the thesis template and make it your own by filling in your own information. This is done by editing the \file{main.tex} file in a text editor or your favourite LaTeX environment.
Open the file and scroll down to the third large block titled \emph{THESIS INFORMATION} where you can see the entries for \emph{University Name}, \emph{Department Name}, etc \ldots
Fill out the information about yourself, your group and institution. You can also insert web links, if you do, make sure you use the full URL, including the \code{http://} for this. If you don't want these to be linked, simply remove the \verb|\href{url}{name}| and only leave the name.
When you have done this, save the file and recompile \code{main.tex}. All the information you filled in should now be in the PDF, complete with web links. You can now begin your thesis proper!
%----------------------------------------------------------------------------------------
\section{The \code{main.tex} File Explained}
The \file{main.tex} file contains the structure of the thesis. There are plenty of written comments that explain what pages, sections and formatting the \LaTeX{} code is creating. Each major document element is divided into commented blocks with titles in all capitals to make it obvious what the following bit of code is doing. Initially there seems to be a lot of \LaTeX{} code, but this is all formatting, and it has all been taken care of so you don't have to do it.
Begin by checking that your information on the title page is correct. For the thesis declaration, your institution may insist on something different than the text given. If this is the case, just replace what you see with what is required in the \emph{DECLARATION PAGE} block.
Then comes a page which contains a funny quote. You can put your own, or quote your favourite scientist, author, person, and so on. Make sure to put the name of the person who you took the quote from.
Following this is the abstract page which summarises your work in a condensed way and can almost be used as a standalone document to describe what you have done. The text you write will cause the heading to move up so don't worry about running out of space.
Next come the acknowledgements. On this page, write about all the people who you wish to thank (not forgetting parents, partners and your advisor/supervisor).
The contents pages, list of figures and tables are all taken care of for you and do not need to be manually created or edited. The next set of pages are more likely to be optional and can be deleted since they are for a more technical thesis: insert a list of abbreviations you have used in the thesis, then a list of the physical constants and numbers you refer to and finally, a list of mathematical symbols used in any formulae. Making the effort to fill these tables means the reader has a one-stop place to refer to instead of searching the internet and references to try and find out what you meant by certain abbreviations or symbols.
The list of symbols is split into the Roman and Greek alphabets. Whereas the abbreviations and symbols ought to be listed in alphabetical order (and this is \emph{not} done automatically for you) the list of physical constants should be grouped into similar themes.
The next page contains a one line dedication. Who will you dedicate your thesis to?
Finally, there is the block where the chapters are included. Uncomment the lines (delete the \code{\%} character) as you write the chapters. Each chapter should be written in its own file and put into the \emph{Chapters} folder and named \file{Chapter1}, \file{Chapter2}, etc\ldots Similarly for the appendices, uncomment the lines as you need them. Each appendix should go into its own file and placed in the \emph{Appendices} folder.
After the preamble, chapters and appendices finally comes the bibliography. The bibliography style (called \option{authoryear}) is used for the bibliography and is a fully featured style that will even include links to where the referenced paper can be found online. Do not underestimate how grateful your reader will be to find that a reference to a paper is just a click away. Of course, this relies on you putting the URL information into the BibTeX file in the first place.
%----------------------------------------------------------------------------------------
\section{Thesis Features and Conventions}\label{ThesisConventions}
To get the best out of this template, there are a few conventions that you may want to follow.
One of the most important (and most difficult) things to keep track of in such a long document as a thesis is consistency. Using certain conventions and ways of doing things (such as using a Todo list) makes the job easier. Of course, all of these are optional and you can adopt your own method.
\subsection{Printing Format}
This thesis template is designed for double sided printing (i.e. content on the front and back of pages) as most theses are printed and bound this way. Switching to one sided printing is as simple as uncommenting the \option{oneside} option of the \code{documentclass} command at the top of the \file{main.tex} file. You may then wish to adjust the margins to suit specifications from your institution.
The headers for the pages contain the page number on the outer side (so it is easy to flick through to the page you want) and the chapter name on the inner side.
The text is set to 11 point by default with single line spacing, again, you can tune the text size and spacing should you want or need to using the options at the very start of \file{main.tex}. The spacing can be changed similarly by replacing the \option{singlespacing} with \option{onehalfspacing} or \option{doublespacing}.
\subsection{Using US Letter Paper}
The paper size used in the template is A4, which is the standard size in Europe. If you are using this thesis template elsewhere and particularly in the United States, then you may have to change the A4 paper size to the US Letter size. This can be done in the margins settings section in \file{main.tex}.
Due to the differences in the paper size, the resulting margins may be different to what you like or require (as it is common for institutions to dictate certain margin sizes). If this is the case, then the margin sizes can be tweaked by modifying the values in the same block as where you set the paper size. Now your document should be set up for US Letter paper size with suitable margins.
\subsection{References}
The \code{biblatex} package is used to format the bibliography and inserts references such as this one \parencite{Reference1}. The options used in the \file{main.tex} file mean that the in-text citations of references are formatted with the author(s) listed with the date of the publication. Multiple references are separated by semicolons (e.g. \parencite{Reference2, Reference1}) and references with more than three authors only show the first author with \emph{et al.} indicating there are more authors (e.g. \parencite{Reference3}). This is done automatically for you. To see how you use references, have a look at the \file{Chapter1.tex} source file. Many reference managers allow you to simply drag the reference into the document as you type.
Scientific references should come \emph{before} the punctuation mark if there is one (such as a comma or period). The same goes for footnotes\footnote{Such as this footnote, here down at the bottom of the page.}. You can change this but the most important thing is to keep the convention consistent throughout the thesis. Footnotes themselves should be full, descriptive sentences (beginning with a capital letter and ending with a full stop). The APA6 states: \enquote{Footnote numbers should be superscripted, [...], following any punctuation mark except a dash.} The Chicago manual of style states: \enquote{A note number should be placed at the end of a sentence or clause. The number follows any punctuation mark except the dash, which it precedes. It follows a closing parenthesis.}
The bibliography is typeset with references listed in alphabetical order by the first author's last name. This is similar to the APA referencing style. To see how \LaTeX{} typesets the bibliography, have a look at the very end of this document (or just click on the reference number links in in-text citations).
\subsubsection{A Note on bibtex}
The bibtex backend used in the template by default does not correctly handle unicode character encoding (i.e. "international" characters). You may see a warning about this in the compilation log and, if your references contain unicode characters, they may not show up correctly or at all. The solution to this is to use the biber backend instead of the outdated bibtex backend. This is done by finding this in \file{main.tex}: \option{backend=bibtex} and changing it to \option{backend=biber}. You will then need to delete all auxiliary BibTeX files and navigate to the template directory in your terminal (command prompt). Once there, simply type \code{biber main} and biber will compile your bibliography. You can then compile \file{main.tex} as normal and your bibliography will be updated. An alternative is to set up your LaTeX editor to compile with biber instead of bibtex, see \href{http://tex.stackexchange.com/questions/154751/biblatex-with-biber-configuring-my-editor-to-avoid-undefined-citations/}{here} for how to do this for various editors.
\subsection{Tables}
Tables are an important way of displaying your results, below is an example table which was generated with this code:
{\small
\begin{verbatim}
\begin{table}
\caption{The effects of treatments X and Y on the four groups studied.}
\label{tab:treatments}
\centering
\begin{tabular}{l l l}
\toprule
\tabhead{Groups} & \tabhead{Treatment X} & \tabhead{Treatment Y} \\
\midrule
1 & 0.2 & 0.8\\
2 & 0.17 & 0.7\\
3 & 0.24 & 0.75\\
4 & 0.68 & 0.3\\
\bottomrule\\
\end{tabular}
\end{table}
\end{verbatim}
}
\begin{table}
\caption{The effects of treatments X and Y on the four groups studied.}
\label{tab:treatments}
\centering
\begin{tabular}{l l l}
\toprule
\tabhead{Groups} & \tabhead{Treatment X} & \tabhead{Treatment Y} \\
\midrule
1 & 0.2 & 0.8\\
2 & 0.17 & 0.7\\
3 & 0.24 & 0.75\\
4 & 0.68 & 0.3\\
\bottomrule\\
\end{tabular}
\end{table}
You can reference tables with \verb|\ref{<label>}| where the label is defined within the table environment. See \file{Chapter1.tex} for an example of the label and citation (e.g. Table~\ref{tab:treatments}).
\subsection{Figures}
There will hopefully be many figures in your thesis (that should be placed in the \emph{Figures} folder). The way to insert figures into your thesis is to use a code template like this:
\begin{verbatim}
\begin{figure}
\centering
\includegraphics{Figures/Electron}
\decoRule
\caption[An Electron]{An electron (artist's impression).}
\label{fig:Electron}
\end{figure}
\end{verbatim}
Also look in the source file. Putting this code into the source file produces the picture of the electron that you can see in the figure below.
\begin{figure}[th]
\centering
\includegraphics{Figures/Electron}
\decoRule
\caption[An Electron]{An electron (artist's impression).}
\label{fig:Electron}
\end{figure}
Sometimes figures don't always appear where you write them in the source. The placement depends on how much space there is on the page for the figure. Sometimes there is not enough room to fit a figure directly where it should go (in relation to the text) and so \LaTeX{} puts it at the top of the next page. Positioning figures is the job of \LaTeX{} and so you should only worry about making them look good!
Figures usually should have captions just in case you need to refer to them (such as in Figure~\ref{fig:Electron}). The \verb|\caption| command contains two parts, the first part, inside the square brackets is the title that will appear in the \emph{List of Figures}, and so should be short. The second part in the curly brackets should contain the longer and more descriptive caption text.
The \verb|\decoRule| command is optional and simply puts an aesthetic horizontal line below the image. If you do this for one image, do it for all of them.
\LaTeX{} is capable of using images in pdf, jpg and png format.
\subsection{Typesetting mathematics}
If your thesis is going to contain heavy mathematical content, be sure that \LaTeX{} will make it look beautiful, even though it won't be able to solve the equations for you.
The \enquote{Not So Short Introduction to \LaTeX} (available on \href{http://www.ctan.org/tex-archive/info/lshort/english/lshort.pdf}{CTAN}) should tell you everything you need to know for most cases of typesetting mathematics. If you need more information, a much more thorough mathematical guide is available from the AMS called, \enquote{A Short Math Guide to \LaTeX} and can be downloaded from:
\url{ftp://ftp.ams.org/pub/tex/doc/amsmath/short-math-guide.pdf}
There are many different \LaTeX{} symbols to remember, luckily you can find the most common symbols in \href{http://ctan.org/pkg/comprehensive}{The Comprehensive \LaTeX~Symbol List}.
You can write an equation, which is automatically given an equation number by \LaTeX{} like this:
\begin{verbatim}
\begin{equation}
E = mc^{2}
\label{eqn:Einstein}
\end{equation}
\end{verbatim}
This will produce Einstein's famous energy-matter equivalence equation:
\begin{equation}
E = mc^{2}
\label{eqn:Einstein}
\end{equation}
All equations you write (which are not in the middle of paragraph text) are automatically given equation numbers by \LaTeX{}. If you don't want a particular equation numbered, use the unnumbered form:
\begin{verbatim}
\[ a^{2}=4 \]
\end{verbatim}
%----------------------------------------------------------------------------------------
\section{Sectioning and Subsectioning}
You should break your thesis up into nice, bite-sized sections and subsections. \LaTeX{} automatically builds a table of Contents by looking at all the \verb|\chapter{}|, \verb|\section{}| and \verb|\subsection{}| commands you write in the source.
The Table of Contents should only list the sections to three (3) levels. A \verb|chapter{}| is level zero (0). A \verb|\section{}| is level one (1) and so a \verb|\subsection{}| is level two (2). In your thesis it is likely that you will even use a \verb|subsubsection{}|, which is level three (3). The depth to which the Table of Contents is formatted is set within \file{MastersDoctoralThesis.cls}. If you need this changed, you can do it in \file{main.tex}.
%----------------------------------------------------------------------------------------
\section{In Closing}
You have reached the end of this mini-guide. You can now rename or overwrite this pdf file and begin writing your own \file{Chapter1.tex} and the rest of your thesis. The easy work of setting up the structure and framework has been taken care of for you. It's now your job to fill it out!
Good luck and have lots of fun!
\begin{flushright}
Guide written by ---\\
Sunil Patel: \href{http://www.sunilpatel.co.uk}{www.sunilpatel.co.uk}\\
Vel: \href{http://www.LaTeXTemplates.com}{LaTeXTemplates.com}
\end{flushright}

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% Chapter Template
\chapter{Chapter Title Here} % Main chapter title
\label{ChapterX} % Change X to a consecutive number; for referencing this chapter elsewhere, use \ref{ChapterX}
%----------------------------------------------------------------------------------------
% SECTION 1
%----------------------------------------------------------------------------------------
\section{Main Section 1}
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%-----------------------------------
% SUBSECTION 1
%-----------------------------------
\subsection{Subsection 1}
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%-----------------------------------
% SUBSECTION 2
%-----------------------------------
\subsection{Subsection 2}
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%----------------------------------------------------------------------------------------
% SECTION 2
%----------------------------------------------------------------------------------------
\section{Main Section 2}
Sed ullamcorper quam eu nisl interdum at interdum enim egestas. Aliquam placerat justo sed lectus lobortis ut porta nisl porttitor. Vestibulum mi dolor, lacinia molestie gravida at, tempus vitae ligula. Donec eget quam sapien, in viverra eros. Donec pellentesque justo a massa fringilla non vestibulum metus vestibulum. Vestibulum in orci quis felis tempor lacinia. Vivamus ornare ultrices facilisis. Ut hendrerit volutpat vulputate. Morbi condimentum venenatis augue, id porta ipsum vulputate in. Curabitur luctus tempus justo. Vestibulum risus lectus, adipiscing nec condimentum quis, condimentum nec nisl. Aliquam dictum sagittis velit sed iaculis. Morbi tristique augue sit amet nulla pulvinar id facilisis ligula mollis. Nam elit libero, tincidunt ut aliquam at, molestie in quam. Aenean rhoncus vehicula hendrerit.

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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Masters/Doctoral Thesis
% LaTeX Template
% Version 2.5 (27/8/17)
%
% This template was downloaded from:
% http://www.LaTeXTemplates.com
%
% Version 2.x major modifications by:
% Vel (vel@latextemplates.com)
%
% This template is based on a template by:
% Steve Gunn (http://users.ecs.soton.ac.uk/srg/softwaretools/document/templates/)
% Sunil Patel (http://www.sunilpatel.co.uk/thesis-template/)
%
% Template license:
% CC BY-NC-SA 3.0 (http://creativecommons.org/licenses/by-nc-sa/3.0/)
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%----------------------------------------------------------------------------------------
% PACKAGES AND OTHER DOCUMENT CONFIGURATIONS
%----------------------------------------------------------------------------------------
\documentclass[
11pt, % The default document font size, options: 10pt, 11pt, 12pt
%oneside, % Two side (alternating margins) for binding by default, uncomment to switch to one side
%ngreek, % ngerman for German
singlespacing, % Single line spacing, alternatives: onehalfspacing or doublespacing
%draft, % Uncomment to enable draft mode (no pictures, no links, overfull hboxes indicated)
%nolistspacing, % If the document is onehalfspacing or doublespacing, uncomment this to set spacing in lists to single
liststotoc, % Uncomment to add the list of figures/tables/etc to the table of contents
toctotoc, % Uncomment to add the main table of contents to the table of contents
%parskip, % Uncomment to add space between paragraphs
%nohyperref, % Uncomment to not load the hyperref package
headsepline, % Uncomment to get a line under the header
%chapterinoneline, % Uncomment to place the chapter title next to the number on one line
%consistentlayout, % Uncomment to change the layout of the declaration, abstract and acknowledgements pages to match the default layout
]{MastersDoctoralThesis} % The class file specifying the document structure
%\usepackage[utf8]{inputenc} % Required for inputting international characters
%\usepackage[T1]{fontenc} % Output font encoding for international characters
%\usepackage{fontenc} % Output font encoding for international characters
%\usepackage{mathpazo} % Use the Palatino font by default
\usepackage{fontspec}
\usepackage{xgreek}
\usepackage{xunicode}
\usepackage{xltxtra}
\usepackage[Greek,Latin]{ucharclasses}
\setTransitionsForGreek{\setlanguage{greek}}{\setlanguage{american}} % Instead of american, any other language can be used
\setromanfont[Mapping=tex-text]{Linux Libertine}
%\setmathfont{Asana Math}
\setmainfont{CMU Serif}
\setsansfont{CMU Sans Serif}
\newfontfamily{\greekfont}{CMU Serif}
\newfontfamily{\greekfontsf}{CMU Sans Serif}
\setmainfont{GFS Didot}
\usepackage[]{unicode-math}
\setmathfont{Latin Modern Math}
\usepackage[backend=bibtex,style=authoryear,natbib=true]{biblatex} % Use the bibtex backend with the authoryear citation style (which resembles APA)
\addbibresource{example.bib} % The filename of the bibliography
\usepackage[autostyle=true]{csquotes} % Required to generate language-dependent quotes in the bibliography
%----------------------------------------------------------------------------------------
% MARGIN SETTINGS
%----------------------------------------------------------------------------------------
\geometry{
paper=a4paper, % Change to letterpaper for US letter
inner=2.5cm, % Inner margin
outer=3.8cm, % Outer margin
bindingoffset=.5cm, % Binding offset
top=1.5cm, % Top margin
bottom=1.5cm, % Bottom margin
%showframe, % Uncomment to show how the type block is set on the page
}
%----------------------------------------------------------------------------------------
% THESIS INFORMATION
%----------------------------------------------------------------------------------------
\thesistitle{Thesis Title} % Your thesis title, this is used in the title and abstract, print it elsewhere with \ttitle
\supervisor{Dr. James \textsc{Smith}} % Your supervisor's name, this is used in the title page, print it elsewhere with \supname
\examiner{} % Your examiner's name, this is not currently used anywhere in the template, print it elsewhere with \examname
\degree{Δίπλωμα Μεταπτυχιακών Σπουδών (Δ.Μ.Σ.)} % Your degree name, this is used in the title page and abstract, print it elsewhere with \degreename
\author{John \textsc{Smith}} % Your name, this is used in the title page and abstract, print it elsewhere with \authorname
\addresses{} % Your address, this is not currently used anywhere in the template, print it elsewhere with \addressname
\subject{Δίκτυα Επικοινωνιών Νέας Γενιάς} % Your subject area, this is not currently used anywhere in the template, print it elsewhere with \subjectname
\keywords{} % Keywords for your thesis, this is not currently used anywhere in the template, print it elsewhere with \keywordnames
\university{\href{http://www.swarmlab.io}{Πανεπιστήμιο ... }} % Your university's name and URL, this is used in the title page and abstract, print it elsewhere with \univname
\department{\href{http://docs.swarmlab.io/SwarmLab-HowTos/swarmlab/docs/swarmlab/docs/index.html/}{Πρόγραμμα Μεταπτυχιακών Σπουδών}} % Your department's name and URL, this is used in the title page and abstract, print it elsewhere with \deptname
\group{\href{http://docs.swarmlab.io/SwarmLab-HowTos/swarmlab/docs/swarmlab/docs/index.html}{Δίκτυα Επικοινωνιών}} % Your research group's name and URL, this is used in the title page, print it elsewhere with \groupname
\faculty{\href{http://docs.swarmlab.io/SwarmLab-HowTos/swarmlab/docs/swarmlab/docs/index.html}{Τμήμα ...}} % Your faculty's name and URL, this is used in the title page and abstract, print it elsewhere with \facname
\AtBeginDocument{
\hypersetup{pdftitle=\ttitle} % Set the PDF's title to your title
\hypersetup{pdfauthor=\authorname} % Set the PDF's author to your name
\hypersetup{pdfkeywords=\keywordnames} % Set the PDF's keywords to your keywords
}
\begin{document}
\setlanguage{monogreek}
\frontmatter % Use roman page numbering style (i, ii, iii, iv...) for the pre-content pages
\pagestyle{plain} % Default to the plain heading style until the thesis style is called for the body content
%----------------------------------------------------------------------------------------
% TITLE PAGE
%----------------------------------------------------------------------------------------
\begin{titlepage}
\begin{center}
\vspace*{.06\textheight}
{\scshape\LARGE \univname\par}\vspace{1.5cm} % University name
\textsc{\Large Θέμα}\\[0.5cm] % Thesis type
\HRule \\[0.4cm] % Horizontal line
{\huge \bfseries \ttitle\par}\vspace{0.4cm} % Thesis title
\HRule \\[1.5cm] % Horizontal line
\begin{minipage}[t]{0.4\textwidth}
\begin{flushleft} \large
\emph{Author:}\\
\href{http://www.johnsmith.com}{\authorname} % Author name - remove the \href bracket to remove the link
\end{flushleft}
\end{minipage}
\begin{minipage}[t]{0.4\textwidth}
\begin{flushright} \large
\emph{Επιβλέπων:} \\
\href{http://www.jamessmith.com}{\supname} % Supervisor name - remove the \href bracket to remove the link
\end{flushright}
\end{minipage}\\[3cm]
\vfill
\large \textit{A thesis submitted in fulfillment of the requirements\\ for the degree of \degreename}\\[0.3cm] % University requirement text
\textit{in the}\\[0.4cm]
\groupname\\\deptname\\[2cm] % Research group name and department name
\vfill
{\large \today}\\[4cm] % Date
%\includegraphics{Logo} % University/department logo - uncomment to place it
\vfill
\end{center}
\end{titlepage}
%----------------------------------------------------------------------------------------
% DECLARATION PAGE
%----------------------------------------------------------------------------------------
\begin{declaration}
\addchaptertocentry{\authorshipname} % Add the declaration to the table of contents
\noindent I, \authorname, declare that this thesis titled, \enquote{\ttitle} and the work presented in it are my own. I confirm that:
\begin{itemize}
\item This work was done wholly or mainly while in candidature for a research degree at this University.
\item Where any part of this thesis has previously been submitted for a degree or any other qualification at this University or any other institution, this has been clearly stated.
\item Where I have consulted the published work of others, this is always clearly attributed.
\item Where I have quoted from the work of others, the source is always given. With the exception of such quotations, this thesis is entirely my own work.
\item I have acknowledged all main sources of help.
\item Where the thesis is based on work done by myself jointly with others, I have made clear exactly what was done by others and what I have contributed myself.\\
\end{itemize}
\noindent Signed:\\
\rule[0.5em]{25em}{0.5pt} % This prints a line for the signature
\noindent Date:\\
\rule[0.5em]{25em}{0.5pt} % This prints a line to write the date
\end{declaration}
\cleardoublepage
%----------------------------------------------------------------------------------------
% QUOTATION PAGE
%----------------------------------------------------------------------------------------
\vspace*{0.2\textheight}
\noindent\enquote{\itshape Thanks to my solid academic training, today I can write hundreds of words on virtually any topic without possessing a shred of information, which is how I got a good job in journalism.}\bigbreak
\hfill Dave Barry
%----------------------------------------------------------------------------------------
% ABSTRACT PAGE
%----------------------------------------------------------------------------------------
\begin{abstract}
\addchaptertocentry{\abstractname} % Add the abstract to the table of contents
The Thesis Abstract is written here (and usually kept to just this page). The page is kept centered vertically so can expand into the blank space above the title too\ldots
\end{abstract}
%----------------------------------------------------------------------------------------
% ACKNOWLEDGEMENTS
%----------------------------------------------------------------------------------------
\begin{acknowledgements}
\addchaptertocentry{\acknowledgementname} % Add the acknowledgements to the table of contents
The acknowledgments and the people to thank go here, don't forget to include your project advisor\ldots
\end{acknowledgements}
%----------------------------------------------------------------------------------------
% LIST OF CONTENTS/FIGURES/TABLES PAGES
%----------------------------------------------------------------------------------------
\tableofcontents % Prints the main table of contents
\listoffigures % Prints the list of figures
\listoftables % Prints the list of tables
%----------------------------------------------------------------------------------------
% ABBREVIATIONS
%----------------------------------------------------------------------------------------
\begin{abbreviations}{ll} % Include a list of abbreviations (a table of two columns)
\textbf{LAH} & \textbf{L}ist \textbf{A}bbreviations \textbf{H}ere\\
\textbf{WSF} & \textbf{W}hat (it) \textbf{S}tands \textbf{F}or\\
\end{abbreviations}
%----------------------------------------------------------------------------------------
% PHYSICAL CONSTANTS/OTHER DEFINITIONS
%----------------------------------------------------------------------------------------
\begin{constants}{lr@{${}={}$}l} % The list of physical constants is a three column table
% The \SI{}{} command is provided by the siunitx package, see its documentation for instructions on how to use it
Speed of Light & $c_{0}$ & \SI{2.99792458e8}{\meter\per\second} (exact)\\
%Constant Name & $Symbol$ & $Constant Value$ with units\\
\end{constants}
%----------------------------------------------------------------------------------------
% SYMBOLS
%----------------------------------------------------------------------------------------
\begin{symbols}{lll} % Include a list of Symbols (a three column table)
$a$ & distance & \si{\meter} \\
$P$ & power & \si{\watt} (\si{\joule\per\second}) \\
%Symbol & Name & Unit \\
\addlinespace % Gap to separate the Roman symbols from the Greek
$\omega$ & angular frequency & \si{\radian} \\
\end{symbols}
%----------------------------------------------------------------------------------------
% DEDICATION
%----------------------------------------------------------------------------------------
\dedicatory{For/Dedicated to/To my\ldots}
%----------------------------------------------------------------------------------------
% THESIS CONTENT - CHAPTERS
%----------------------------------------------------------------------------------------
\mainmatter % Begin numeric (1,2,3...) page numbering
\pagestyle{thesis} % Return the page headers back to the "thesis" style
% Include the chapters of the thesis as separate files from the Chapters folder
% Uncomment the lines as you write the chapters
% include text
\include{Chapters/Chapter1}
\include{Chapters/Chapter2}
%\include{Chapters/Chapter3}
%\include{Chapters/Chapter4}
%\include{Chapters/Chapter5}
%----------------------------------------------------------------------------------------
% THESIS CONTENT - APPENDICES
%----------------------------------------------------------------------------------------
\appendix % Cue to tell LaTeX that the following "chapters" are Appendices
% Include the appendices of the thesis as separate files from the Appendices folder
% Uncomment the lines as you write the Appendices
\include{Appendices/AppendixA}
%\include{Appendices/AppendixB}
%\include{Appendices/AppendixC}
%----------------------------------------------------------------------------------------
% BIBLIOGRAPHY
%----------------------------------------------------------------------------------------
\printbibliography[heading=bibintoc]
%----------------------------------------------------------------------------------------
\end{document}

3
extrapackages
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wrapfig
booktabs

1
fonts-extra/README
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If the font package comes in a packed file, you can in most cases safely extract with subdirectories here

8
get-swarmlab.keys
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registry_address=hub.swarmlab.io
registry_port=5443
mkdir -p /etc/docker/certs.d/$registry_address:$registry_port
openssl s_client -showcerts -connect $registry_address:$registry_port < /dev/null | sed -ne '/-BEGIN CERTIFICATE-/,/-END CERTIFICATE-/p' > /etc/docker/certs.d/$registry_address:$registry_port/ca.crt
registry_port=5480
mkdir -p /etc/docker/certs.d/$registry_address:$registry_port
openssl s_client -showcerts -connect $registry_address:$registry_port < /dev/null | sed -ne '/-BEGIN CERTIFICATE-/,/-END CERTIFICATE-/p' > /etc/docker/certs.d/$registry_address:$registry_port/ca.crt

2
run-custom.sh
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docker run -it -v $PWD/docs:/home -v /tmp/.X11-unix:/tmp/.X11-unix -e DISPLAY=unix$DISPLAY xelatex-thesis-custom:latest /bin/bash

15
run.sh
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#!/bin/sh
docker pull hub.swarmlab.io:5480/xelatex-base:latest
docker run -it -v $PWD/docs:/home -v /tmp/.X11-unix:/tmp/.X11-unix -e DISPLAY=unix$DISPLAY hub.swarmlab.io:5480/xelatex-base:latest /bin/bash
echo ""
echo "Get"
echo ""
echo "Pulling ..."
echo "ERROR: Get https://hub.swarmlab.io:5480:/v2/: x509: certificate signed by unknown authority"
echo ""
echo "run"
echo ""
echo "sudo ./get-swarmlab.keys"
echo ""

58
setup.sh
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#!/bin/sh
set -e
set -o pipefail
scheme="$1"
echo "==> Install system packages"
apk --no-cache add \
bash \
make \
xz
# Install additional packages for non full scheme
if [ "$scheme" != "full" ]; then
tlmgr install \
fmtcount
echo "==> extra packages"
extrap=/extrapackages
if [ -f $extrap ]; then
while read -r line; do
extrapackages="$extrapackages $line"
done < $extrap
tlmgr install $extrapackages
else
echo "No extrapackages file"
fi
cp /usr/local/texlive/2020/texmf-var/fonts/conf/texlive-fontconfig.conf /etc/fonts/conf.d/09-texlive.conf
apk add --no-cache msttcorefonts-installer
update-ms-fonts
fc-cache -f
fi
texhash
echo "==> Clean up"
rm -rf \
/opt/texlive/texdir/install-tl \
/opt/texlive/texdir/install-tl.log \
/opt/texlive/texdir/texmf-dist/doc \
/opt/texlive/texdir/texmf-dist/source \
/opt/texlive/texdir/texmf-var/web2c/tlmgr.log \
/root/.gnupg \
/setup.sh \
/extrapackages \
/texlive.profile \
/texlive_pgp_keys.asc \
/tmp/install-tl \
/tmp/install-tl-unx
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